Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QNH40_RS11245 Genome accession   NZ_CP126086
Coordinates   2204520..2205323 (-) Length   267 a.a.
NCBI ID   WP_008342226.1    Uniprot ID   A0A5K1NAR3
Organism   Bacillus altitudinis strain CES-OCA-19     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2199520..2210323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH40_RS11230 (QNH40_11230) - 2201736..2201972 (+) 237 WP_017357960.1 DUF2627 domain-containing protein -
  QNH40_RS11235 (QNH40_11235) - 2202006..2202743 (-) 738 WP_283930990.1 glycerophosphodiester phosphodiesterase -
  QNH40_RS11240 (QNH40_11240) - 2202970..2204070 (-) 1101 WP_019743381.1 Rap family tetratricopeptide repeat protein -
  QNH40_RS11245 (QNH40_11245) spo0A 2204520..2205323 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  QNH40_RS11250 (QNH40_11250) spoIVB 2205607..2206884 (-) 1278 WP_113747198.1 SpoIVB peptidase -
  QNH40_RS11255 (QNH40_11255) recN 2207083..2208816 (-) 1734 WP_113747197.1 DNA repair protein RecN Machinery gene
  QNH40_RS11260 (QNH40_11260) argR 2208851..2209300 (-) 450 WP_007501163.1 transcriptional regulator ArgR -
  QNH40_RS11265 (QNH40_11265) - 2209462..2210316 (-) 855 WP_007501164.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29891.41 Da        Isoelectric Point: 6.3918

>NTDB_id=835067 QNH40_RS11245 WP_008342226.1 2204520..2205323(-) (spo0A) [Bacillus altitudinis strain CES-OCA-19]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVSHRSSSIQNSVLRSKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=835067 QNH40_RS11245 WP_008342226.1 2204520..2205323(-) (spo0A) [Bacillus altitudinis strain CES-OCA-19]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAACTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGAAATGACCAAACAG
CCAAGTGTCATTATGCTGACGGCTTTCGGACAAGAAGACGTAACGAAAAAAGCGGTCGATTTGGGCGCATCCTATTTCAT
TTTGAAACCATTCGATATGGAAAACCTCGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCAGCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGCAGCAAACCTGAACCGAAACGTAAGAACTTAGATGCGAGCATTACGACAATT
ATTCATGAGATTGGCGTGCCAGCTCATATTAAAGGTTATTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGATAT
TGAACTACTCGGCAGTATTACAAAAGTATTGTACCCAGACATTGCAAAGAAATTTAACACGACAGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTGGCTTGGAGCAGAGGGAATATTGACTCCATTTCCTCACTCTTTGGTTACACAGTC
AGCATGTCAAAAGCCAAACCAACCAATTCAGAATTTATTGCGATGGTGGCTGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884