Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ZMTM_RS12065 Genome accession   NZ_AP024110
Coordinates   2495144..2495644 (-) Length   166 a.a.
NCBI ID   WP_221764077.1    Uniprot ID   A0A8D5JZW0
Organism   Methyloradius palustris strain Zm11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2490144..2500644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ZMTM_RS12025 (ZMTM_23020) - 2490214..2490792 (+) 579 WP_221764070.1 YceI family protein -
  ZMTM_RS12030 (ZMTM_23030) - 2490853..2491425 (+) 573 WP_221764071.1 YceI family protein -
  ZMTM_RS12035 (ZMTM_23040) - 2491664..2492152 (+) 489 WP_221764072.1 3'-5' exoribonuclease -
  ZMTM_RS12040 (ZMTM_23050) - 2492164..2492496 (+) 333 WP_221764073.1 TfoX/Sxy family protein -
  ZMTM_RS12045 (ZMTM_23060) - 2492589..2492801 (-) 213 WP_221765736.1 hypothetical protein -
  ZMTM_RS12050 (ZMTM_23070) - 2492944..2493570 (-) 627 WP_221764074.1 outer membrane beta-barrel protein -
  ZMTM_RS12055 (ZMTM_23080) - 2493757..2494230 (-) 474 WP_221764075.1 DUF2846 domain-containing protein -
  ZMTM_RS12060 (ZMTM_23090) - 2494324..2494770 (-) 447 WP_221764076.1 hypothetical protein -
  ZMTM_RS12065 (ZMTM_23110) ssb 2495144..2495644 (-) 501 WP_221764077.1 single-stranded DNA-binding protein Machinery gene
  ZMTM_RS12070 (ZMTM_23120) - 2495681..2497060 (-) 1380 WP_221764078.1 MFS transporter -
  ZMTM_RS12075 (ZMTM_23130) uvrA 2497134..2499947 (+) 2814 WP_221764079.1 excinuclease ABC subunit UvrA -
  ZMTM_RS12080 (ZMTM_23140) - 2499986..2500213 (+) 228 WP_221764080.1 DUF2798 domain-containing protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18159.11 Da        Isoelectric Point: 5.0420

>NTDB_id=83500 ZMTM_RS12065 WP_221764077.1 2495144..2495644(-) (ssb) [Methyloradius palustris strain Zm11]
MASVNKVILVGNLGRDPEMRYMPSGDALANFSIATTDNWKDKNGQKQERTEWHRISMFGKLAEIAGEYLKKGSSVYVEGR
LQTRKWQDKEGNERQTTEVVADRMQMLGGKSGSNTYEVMDEDQSYAPSQGASSSAPPAKRPAPAATSAKPAASGSGFDDF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=83500 ZMTM_RS12065 WP_221764077.1 2495144..2495644(-) (ssb) [Methyloradius palustris strain Zm11]
ATGGCATCAGTCAATAAAGTAATTTTGGTCGGTAATCTAGGGCGTGACCCTGAAATGCGCTATATGCCATCAGGTGACGC
GCTTGCTAACTTCAGCATTGCCACTACAGACAACTGGAAAGATAAAAACGGCCAGAAGCAGGAACGCACCGAATGGCATC
GTATTTCCATGTTCGGCAAGCTTGCTGAAATCGCTGGCGAATATCTCAAAAAAGGCTCATCGGTTTACGTTGAAGGCCGT
CTGCAAACCCGTAAATGGCAAGATAAAGAAGGCAATGAGCGCCAGACCACAGAAGTGGTTGCAGATCGCATGCAAATGCT
AGGCGGTAAAAGCGGCAGTAATACCTATGAAGTCATGGATGAGGATCAATCCTACGCACCTAGCCAAGGTGCATCATCAT
CTGCACCACCAGCTAAACGCCCAGCGCCAGCAGCAACCTCTGCCAAACCAGCAGCGAGCGGATCAGGCTTTGACGATTTT
GATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.514

100

0.566
  ssb Glaesserella parasuis strain SC1401

49.73

100

0.554
  ssb Neisseria meningitidis MC58

51.685

100

0.554
  ssb Neisseria gonorrhoeae MS11

51.124

100

0.548

Multiple sequence alignment