Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QNH30_RS12365 Genome accession   NZ_CP126082
Coordinates   2407500..2408303 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain C1_13     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2402500..2413303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH30_RS12340 (QNH30_12340) glpQ 2403646..2404377 (-) 732 WP_153940105.1 glycerophosphodiester phosphodiesterase -
  QNH30_RS12345 (QNH30_12345) yqiI 2404456..2405076 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  QNH30_RS12350 (QNH30_12350) yqiH 2405091..2405384 (-) 294 WP_003230284.1 lipoprotein -
  QNH30_RS12355 (QNH30_12355) - 2405692..2405844 (+) 153 WP_014480226.1 hypothetical protein -
  QNH30_RS12360 (QNH30_12360) yqiG 2405917..2407035 (+) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  QNH30_RS12365 (QNH30_12365) spo0A 2407500..2408303 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QNH30_RS12370 (QNH30_12370) spoIVB 2408579..2409859 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  QNH30_RS12375 (QNH30_12375) recN 2410034..2411764 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  QNH30_RS12380 (QNH30_12380) argR 2411801..2412250 (-) 450 WP_003230265.1 arginine repressor ArgR -
  QNH30_RS12385 (QNH30_12385) yqxC 2412348..2413193 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=834829 QNH30_RS12365 WP_003226427.1 2407500..2408303(-) (spo0A) [Bacillus subtilis strain C1_13]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=834829 QNH30_RS12365 WP_003226427.1 2407500..2408303(-) (spo0A) [Bacillus subtilis strain C1_13]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1