Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QNH35_RS12175 Genome accession   NZ_CP126081
Coordinates   2367466..2367759 (-) Length   97 a.a.
NCBI ID   WP_003217322.1    Uniprot ID   -
Organism   Bacillus pumilus strain B2_10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2362466..2372759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS12125 (QNH35_12125) sinR 2362628..2362963 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  QNH35_RS12130 (QNH35_12130) - 2363031..2363831 (-) 801 WP_044140977.1 TasA family protein -
  QNH35_RS12135 (QNH35_12135) - 2363890..2364462 (-) 573 WP_044140976.1 signal peptidase I -
  QNH35_RS12140 (QNH35_12140) tapA 2364514..2365041 (-) 528 WP_044140975.1 amyloid fiber anchoring/assembly protein TapA -
  QNH35_RS12145 (QNH35_12145) - 2365341..2365619 (+) 279 WP_283924529.1 DUF3889 domain-containing protein -
  QNH35_RS12150 (QNH35_12150) - 2365653..2365847 (-) 195 WP_106065585.1 YqzE family protein -
  QNH35_RS12155 (QNH35_12155) comGG 2365907..2366290 (-) 384 WP_283923821.1 competence type IV pilus minor pilin ComGG -
  QNH35_RS12160 (QNH35_12160) comGF 2366287..2366817 (-) 531 WP_283923822.1 competence type IV pilus minor pilin ComGF -
  QNH35_RS12165 (QNH35_12165) comGE 2366726..2367043 (-) 318 WP_283923823.1 competence type IV pilus minor pilin ComGE -
  QNH35_RS12170 (QNH35_12170) comGD 2367027..2367473 (-) 447 WP_283923824.1 competence type IV pilus minor pilin ComGD -
  QNH35_RS12175 (QNH35_12175) comGC 2367466..2367759 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  QNH35_RS12180 (QNH35_12180) comGB 2367776..2368855 (-) 1080 WP_260564470.1 competence type IV pilus assembly protein ComGB -
  QNH35_RS12185 (QNH35_12185) comGA 2368797..2369867 (-) 1071 WP_044140966.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH35_RS12190 (QNH35_12190) - 2370046..2370918 (-) 873 WP_113767423.1 STAS domain-containing protein -
  QNH35_RS12200 (QNH35_12200) - 2371142..2371522 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QNH35_RS12205 (QNH35_12205) - 2371736..2371978 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  QNH35_RS12210 (QNH35_12210) - 2372024..2372662 (-) 639 WP_065098400.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10739.69 Da        Isoelectric Point: 7.3837

>NTDB_id=834764 QNH35_RS12175 WP_003217322.1 2367466..2367759(-) (comGC) [Bacillus pumilus strain B2_10]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=834764 QNH35_RS12175 WP_003217322.1 2367466..2367759(-) (comGC) [Bacillus pumilus strain B2_10]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCGATTCTTTTACTTATTACCATTCC
GAATATTACTCGTCACCACCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACTCAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCTTCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392