Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QNH35_RS12125 Genome accession   NZ_CP126081
Coordinates   2362628..2362963 (+) Length   111 a.a.
NCBI ID   WP_012010555.1    Uniprot ID   -
Organism   Bacillus pumilus strain B2_10     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2357628..2367963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS12105 (QNH35_12105) gcvT 2358107..2359204 (-) 1098 WP_265208162.1 glycine cleavage system aminomethyltransferase GcvT -
  QNH35_RS12110 (QNH35_12110) - 2359765..2361435 (+) 1671 WP_283923820.1 SNF2-related protein -
  QNH35_RS12115 (QNH35_12115) - 2361450..2362247 (+) 798 WP_217012213.1 YqhG family protein -
  QNH35_RS12120 (QNH35_12120) - 2362430..2362594 (+) 165 WP_003217357.1 anti-repressor SinI family protein -
  QNH35_RS12125 (QNH35_12125) sinR 2362628..2362963 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  QNH35_RS12130 (QNH35_12130) - 2363031..2363831 (-) 801 WP_044140977.1 TasA family protein -
  QNH35_RS12135 (QNH35_12135) - 2363890..2364462 (-) 573 WP_044140976.1 signal peptidase I -
  QNH35_RS12140 (QNH35_12140) tapA 2364514..2365041 (-) 528 WP_044140975.1 amyloid fiber anchoring/assembly protein TapA -
  QNH35_RS12145 (QNH35_12145) - 2365341..2365619 (+) 279 WP_283924529.1 DUF3889 domain-containing protein -
  QNH35_RS12150 (QNH35_12150) - 2365653..2365847 (-) 195 WP_106065585.1 YqzE family protein -
  QNH35_RS12155 (QNH35_12155) comGG 2365907..2366290 (-) 384 WP_283923821.1 competence type IV pilus minor pilin ComGG -
  QNH35_RS12160 (QNH35_12160) comGF 2366287..2366817 (-) 531 WP_283923822.1 competence type IV pilus minor pilin ComGF -
  QNH35_RS12165 (QNH35_12165) comGE 2366726..2367043 (-) 318 WP_283923823.1 competence type IV pilus minor pilin ComGE -
  QNH35_RS12170 (QNH35_12170) comGD 2367027..2367473 (-) 447 WP_283923824.1 competence type IV pilus minor pilin ComGD -
  QNH35_RS12175 (QNH35_12175) comGC 2367466..2367759 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 13001.59 Da        Isoelectric Point: 5.2831

>NTDB_id=834763 QNH35_RS12125 WP_012010555.1 2362628..2362963(+) (sinR) [Bacillus pumilus strain B2_10]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=834763 QNH35_RS12125 WP_012010555.1 2362628..2362963(+) (sinR) [Bacillus pumilus strain B2_10]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAGAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946