Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH36_RS23825 Genome accession   NZ_CP126080
Coordinates   4784508..4784993 (-) Length   161 a.a.
NCBI ID   WP_144479421.1    Uniprot ID   -
Organism   Mesobacillus sp. AQ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4779508..4789993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH36_RS23805 (QNH36_23805) rplI 4780578..4781027 (-) 450 WP_144479415.1 50S ribosomal protein L9 -
  QNH36_RS23810 (QNH36_23810) - 4781024..4782997 (-) 1974 WP_144479417.1 DHH family phosphoesterase -
  QNH36_RS23815 (QNH36_23815) - 4783028..4783969 (-) 942 WP_144479419.1 YybS family protein -
  QNH36_RS23820 (QNH36_23820) rpsR 4784221..4784457 (-) 237 WP_079507585.1 30S ribosomal protein S18 -
  QNH36_RS23825 (QNH36_23825) ssbA 4784508..4784993 (-) 486 WP_144479421.1 single-stranded DNA-binding protein Machinery gene
  QNH36_RS23830 (QNH36_23830) rpsF 4785072..4785359 (-) 288 WP_144479423.1 30S ribosomal protein S6 -
  QNH36_RS23835 (QNH36_23835) ychF 4785608..4786708 (-) 1101 WP_283904427.1 redox-regulated ATPase YchF -
  QNH36_RS23840 (QNH36_23840) - 4787439..4789439 (-) 2001 WP_283904428.1 molybdopterin-dependent oxidoreductase -
  QNH36_RS23845 (QNH36_23845) - 4789525..4789725 (-) 201 WP_144479429.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17838.63 Da        Isoelectric Point: 4.8013

>NTDB_id=834728 QNH36_RS23825 WP_144479421.1 4784508..4784993(-) (ssbA) [Mesobacillus sp. AQ2]
MMNRVVLVGRLTKDPELRFTPNGVAVATFTLAVNRSFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRVQTR
SYEGQDGKRVYVTEVLAESVQFLEPKGQSSDRGDSGYSRQNDQGSPFGNQNQRQNQGYTKVDEDPFAGGGQIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=834728 QNH36_RS23825 WP_144479421.1 4784508..4784993(-) (ssbA) [Mesobacillus sp. AQ2]
ATGATGAATCGTGTCGTTCTTGTCGGCCGTTTGACCAAGGATCCTGAATTACGTTTCACACCTAATGGAGTTGCAGTTGC
TACTTTCACGCTTGCGGTAAATCGTTCATTTACCAACCAGCAGGGGGAAAGAGAAGCAGACTTCATTAACTGTGTGGTAT
GGCGCCGTCCAGCTGAAAACGTTGCTAATTTCTTGAAGAAAGGCAGCCTTGCAGGTGTAGACGGACGTGTCCAGACTCGC
AGCTATGAAGGACAAGATGGTAAGCGTGTATACGTTACAGAAGTTCTTGCTGAGAGTGTTCAGTTCCTTGAGCCAAAAGG
ACAGTCTTCAGACAGAGGGGATAGCGGTTATTCCCGTCAAAATGATCAAGGTTCCCCGTTTGGGAATCAGAATCAACGCC
AGAACCAAGGTTATACAAAAGTAGATGAAGATCCATTTGCAGGTGGCGGCCAGATCGACATTTCAGATGATGATCTTCCA
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.286

100

0.764
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

65.839

0.422
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.361

75.776

0.366