Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JLC71_RS09895 Genome accession   NZ_AP024094
Coordinates   2073439..2073939 (-) Length   166 a.a.
NCBI ID   WP_200915261.1    Uniprot ID   A0A7I8ECY0
Organism   Jeongeupia sp. HS-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2068439..2078939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLC71_RS09875 (JHS3_19190) - 2071196..2071750 (+) 555 WP_200915257.1 phage tail protein -
  JLC71_RS09880 (JHS3_19200) - 2071760..2072290 (+) 531 WP_200915258.1 phage tail protein -
  JLC71_RS09885 (JHS3_19210) - 2072309..2072824 (+) 516 WP_200915259.1 phage tail protein -
  JLC71_RS09890 (JHS3_19220) - 2072882..2073382 (+) 501 WP_200915260.1 GNAT family N-acetyltransferase -
  JLC71_RS09895 (JHS3_19230) ssb 2073439..2073939 (-) 501 WP_200915261.1 single-stranded DNA-binding protein Machinery gene
  JLC71_RS09900 (JHS3_19240) - 2073939..2075303 (-) 1365 WP_200915262.1 MFS transporter -
  JLC71_RS09905 (JHS3_19260) uvrA 2075458..2078304 (+) 2847 WP_200915263.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18177.19 Da        Isoelectric Point: 5.9298

>NTDB_id=83460 JLC71_RS09895 WP_200915261.1 2073439..2073939(-) (ssb) [Jeongeupia sp. HS-3]
MASLNKVLIIGNLGRDPEVRYLPNGDAVCNFSIATTENWKDKSGQKQEKTEWHNITMYRRLAEIASQYLKKGSSVYIEGK
LQTRKWQDKQTGADRYTTEIIADQMQMLSGRPGSGGGSPADQGGGGGYDDFNQSYAPAPAAAPAARPQAAPAPKRSFDDF
EDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=83460 JLC71_RS09895 WP_200915261.1 2073439..2073939(-) (ssb) [Jeongeupia sp. HS-3]
ATGGCTTCTTTGAACAAGGTGCTGATCATCGGCAACCTCGGGCGCGACCCGGAAGTTCGTTACCTGCCCAACGGTGACGC
GGTGTGCAATTTCAGCATCGCCACCACCGAAAACTGGAAGGACAAGTCCGGCCAGAAGCAGGAAAAAACCGAGTGGCACA
ACATCACCATGTACCGCCGCCTGGCTGAAATCGCCAGCCAGTACCTGAAGAAAGGCAGCTCGGTCTACATCGAAGGCAAG
CTGCAGACGCGCAAGTGGCAAGACAAGCAGACCGGTGCCGACCGTTACACCACCGAAATCATCGCCGACCAGATGCAGAT
GCTCAGCGGCCGTCCCGGCAGCGGCGGCGGCTCGCCAGCAGATCAAGGCGGTGGCGGTGGTTACGACGACTTCAACCAGA
GCTACGCCCCGGCTCCGGCCGCTGCGCCGGCAGCGCGCCCGCAAGCCGCGCCGGCACCGAAGCGCAGCTTCGACGATTTC
GAGGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8ECY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.66

100

0.596
  ssb Neisseria gonorrhoeae MS11

55.114

100

0.584
  ssb Neisseria meningitidis MC58

54.286

100

0.572
  ssb Vibrio cholerae strain A1552

51.099

100

0.56

Multiple sequence alignment