Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNK07_RS21230 Genome accession   NZ_CP125981
Coordinates   4088717..4089235 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain ZKY06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4083717..4094235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK07_RS21200 (QNK07_21205) yyaJ 4084220..4085575 (+) 1356 WP_029318525.1 MFS transporter -
  QNK07_RS21205 (QNK07_21210) maa 4085609..4086163 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  QNK07_RS21210 (QNK07_21215) yyaH 4086181..4086561 (-) 381 WP_003244460.1 VOC family protein -
  QNK07_RS21215 (QNK07_21220) ccpB 4086617..4087552 (-) 936 WP_032722826.1 transcriptional regulator CcpB -
  QNK07_RS21220 (QNK07_21225) xth 4087611..4088369 (-) 759 WP_032722827.1 exodeoxyribonuclease III -
  QNK07_RS21225 (QNK07_21230) rpsR 4088434..4088673 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  QNK07_RS21230 (QNK07_21235) ssbA 4088717..4089235 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  QNK07_RS21235 (QNK07_21240) rpsF 4089276..4089563 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  QNK07_RS21240 (QNK07_21245) ychF 4089674..4090774 (-) 1101 WP_032722828.1 redox-regulated ATPase YchF -
  QNK07_RS21245 (QNK07_21250) yyaE 4090901..4092904 (-) 2004 WP_032722829.1 molybdopterin-dependent oxidoreductase -
  QNK07_RS21250 (QNK07_21255) yyzM 4092955..4093161 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=833947 QNK07_RS21230 WP_003219228.1 4088717..4089235(-) (ssbA) [Bacillus subtilis strain ZKY06]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=833947 QNK07_RS21230 WP_003219228.1 4088717..4089235(-) (ssbA) [Bacillus subtilis strain ZKY06]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAACCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378