Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QNK07_RS12515 Genome accession   NZ_CP125981
Coordinates   2435971..2436306 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain ZKY06     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2430971..2441306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK07_RS12495 (QNK07_12515) gcvT 2431563..2432651 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  QNK07_RS12500 (QNK07_12520) hepAA 2433093..2434766 (+) 1674 WP_029726726.1 DEAD/DEAH box helicase -
  QNK07_RS12505 (QNK07_12525) yqhG 2434787..2435581 (+) 795 WP_015714249.1 YqhG family protein -
  QNK07_RS12510 (QNK07_12530) sinI 2435764..2435937 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  QNK07_RS12515 (QNK07_12535) sinR 2435971..2436306 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QNK07_RS12520 (QNK07_12540) tasA 2436399..2437184 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  QNK07_RS12525 (QNK07_12545) sipW 2437248..2437820 (-) 573 WP_072692741.1 signal peptidase I SipW -
  QNK07_RS12530 (QNK07_12550) tapA 2437804..2438565 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  QNK07_RS12535 (QNK07_12555) yqzG 2438837..2439163 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QNK07_RS12540 (QNK07_12560) spoIITA 2439205..2439384 (-) 180 WP_029726723.1 YqzE family protein -
  QNK07_RS12545 (QNK07_12565) comGG 2439456..2439830 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  QNK07_RS12550 (QNK07_12570) comGF 2439831..2440214 (-) 384 WP_032722118.1 ComG operon protein ComGF Machinery gene
  QNK07_RS12555 (QNK07_12575) comGE 2440240..2440587 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  QNK07_RS12560 (QNK07_12580) comGD 2440571..2441002 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  QNK07_RS12565 (QNK07_12585) comGC 2440992..2441288 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=833910 QNK07_RS12515 WP_003226345.1 2435971..2436306(+) (sinR) [Bacillus subtilis strain ZKY06]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=833910 QNK07_RS12515 WP_003226345.1 2435971..2436306(+) (sinR) [Bacillus subtilis strain ZKY06]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1