Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   SR852_RS13830 Genome accession   NZ_CP140161
Coordinates   2668633..2670414 (+) Length   593 a.a.
NCBI ID   WP_009328090.1    Uniprot ID   Q65IL6
Organism   Bacillus licheniformis strain ATCC 14580     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2663633..2675414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS13790 (SR852_13790) - 2663822..2664382 (+) 561 WP_009328087.1 DUF1641 domain-containing protein -
  SR852_RS13795 (SR852_13795) - 2664403..2664521 (+) 119 Protein_2673 DUF4352 domain-containing protein -
  SR852_RS13800 (SR852_13800) - 2664692..2665657 (+) 966 WP_009328088.1 nuclease-related domain-containing protein -
  SR852_RS13805 (SR852_13805) - 2666563..2666916 (+) 354 WP_003182597.1 MmcQ/YjbR family DNA-binding protein -
  SR852_RS13815 (SR852_13815) - 2667299..2667475 (-) 177 WP_003182594.1 YjfB family protein -
  SR852_RS13820 (SR852_13820) - 2667715..2667849 (-) 135 WP_016885399.1 hypothetical protein -
  SR852_RS13825 (SR852_13825) - 2667952..2668470 (+) 519 WP_009328089.1 hypothetical protein -
  SR852_RS13830 (SR852_13830) recQ 2668633..2670414 (+) 1782 WP_009328090.1 DNA helicase RecQ Machinery gene
  SR852_RS13835 (SR852_13835) - 2670650..2671456 (+) 807 WP_009328091.1 3D domain-containing protein -
  SR852_RS13840 (SR852_13840) - 2671615..2673204 (+) 1590 WP_009328092.1 solute:sodium symporter family transporter -
  SR852_RS13845 (SR852_13845) - 2673277..2673786 (-) 510 WP_003182581.1 GNAT family N-acetyltransferase -
  SR852_RS13850 (SR852_13850) - 2674016..2674996 (+) 981 WP_003182579.1 hypothetical protein -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 66842.46 Da        Isoelectric Point: 6.1705

>NTDB_id=833909 SR852_RS13830 WP_009328090.1 2668633..2670414(+) (recQ) [Bacillus licheniformis strain ATCC 14580]
MLEKAEALLQHYFGYPSLRPGQKKAIQSVVSEKRDTACIMPTGGGKSICYQIPALLMEGTTIVISPLISLMKDQVDALNQ
LGIQAAYVNSSLGHNEIAERLSVFKEGGYKLFYVTPERLTSPEFIRAISHIHIPLVAIDEAHCISQWGHDFRPSYRHIEG
FLNSLGTRPVVLALTATATPEVHEDICTQLGIEKENTVFTGFSRDNLTFKILKGENRDRFIESYVEKNRSEAGIIYTATR
KEAERISSRLSQKGIAAGCYHGGMDDEERDRQQDLFLNDEISVMTATSAFGMGIDKSNIRYVIHAQIPKNMESYYQEAGR
AGRDGLDSECILLFSPQDIRLQRFLIEQSTEDEDIRAQDVKKLRQMVDFCHTEGCLERFILSYFGEVPTEDCGRCGSCLD
TRSITDVTKEAQMVLSCIIRMGERFGKTMVAQVLAGSKNKKVTENGFQQLSTYGILKKRSIADISDFIEFLIADEYIKMS
DGTYPVLFVANKGRNVLLGREAVMRKEKMQTNQIVKDDELFERLRALRRKLAQEQGVPPFVVFSDETLREMSGKVPLTDE
ELLSVKGVGEQKRVKYGAVFLQELQAYKTEKEA

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=833909 SR852_RS13830 WP_009328090.1 2668633..2670414(+) (recQ) [Bacillus licheniformis strain ATCC 14580]
ATGCTAGAGAAAGCCGAAGCACTATTGCAGCACTATTTTGGCTATCCTTCACTGCGCCCGGGGCAGAAGAAAGCCATTCA
ATCTGTCGTTTCTGAAAAGCGAGATACAGCATGCATTATGCCGACGGGCGGAGGCAAATCAATCTGCTACCAAATTCCCG
CGCTCCTTATGGAAGGGACAACCATTGTGATCTCTCCTTTAATTTCCTTGATGAAGGACCAGGTGGATGCTTTAAATCAG
CTTGGAATTCAAGCTGCGTACGTGAACAGTTCTTTAGGCCATAACGAAATCGCTGAGCGGCTCTCCGTATTTAAGGAAGG
CGGCTACAAGCTCTTTTATGTAACACCTGAGCGGCTGACGTCTCCCGAATTCATTCGCGCGATTTCCCACATTCATATTC
CGCTGGTAGCCATTGATGAAGCTCATTGCATTTCACAGTGGGGACATGATTTCAGGCCGAGCTACAGACATATTGAAGGC
TTTTTAAATAGCCTCGGCACCCGCCCGGTTGTATTGGCGTTGACGGCTACCGCAACGCCCGAGGTTCATGAGGATATTTG
CACACAGCTCGGGATCGAAAAAGAGAACACGGTTTTTACCGGTTTTTCACGGGATAATTTGACGTTTAAAATTTTAAAAG
GCGAAAACAGGGACCGTTTTATCGAATCATATGTGGAGAAAAACCGCTCAGAGGCGGGAATTATCTATACAGCGACAAGA
AAGGAAGCCGAAAGAATATCAAGCCGCCTCTCTCAAAAAGGAATTGCGGCCGGGTGCTATCACGGCGGGATGGATGATGA
AGAAAGAGACCGGCAGCAGGATCTCTTTTTAAATGATGAGATCAGTGTAATGACAGCGACCTCGGCGTTTGGAATGGGCA
TCGATAAATCCAATATCCGCTATGTGATTCATGCCCAAATTCCAAAAAATATGGAGAGCTACTACCAGGAGGCGGGACGA
GCCGGACGCGACGGCCTTGACAGCGAGTGCATCCTGCTGTTTTCCCCTCAGGACATTCGGCTTCAGCGGTTTTTAATCGA
ACAGTCGACAGAAGATGAAGACATTCGGGCGCAAGACGTGAAAAAACTGAGGCAAATGGTTGATTTTTGCCATACGGAAG
GCTGTCTCGAACGGTTTATTCTTTCTTATTTTGGCGAAGTTCCAACCGAAGACTGCGGCAGGTGCGGCAGCTGTCTCGAC
ACCCGAAGCATCACCGATGTGACGAAGGAGGCACAGATGGTGCTGTCCTGCATCATCCGCATGGGAGAAAGGTTCGGAAA
AACCATGGTGGCGCAAGTTCTGGCAGGTTCGAAAAATAAGAAAGTGACCGAAAACGGCTTCCAGCAATTATCGACTTACG
GAATTTTAAAGAAACGGTCTATTGCCGACATAAGCGATTTTATAGAGTTTTTAATCGCAGATGAGTACATCAAAATGTCC
GACGGGACATATCCTGTTCTCTTTGTCGCCAACAAGGGGCGAAACGTTTTGCTCGGCCGGGAAGCGGTGATGCGCAAAGA
AAAAATGCAAACAAATCAAATCGTTAAAGATGACGAATTGTTTGAACGGTTAAGGGCGCTGCGCAGAAAGCTTGCTCAGG
AACAAGGCGTGCCTCCTTTTGTTGTATTCTCTGACGAAACGCTGCGGGAAATGAGCGGGAAAGTCCCTCTGACAGACGAA
GAGCTTTTGTCAGTCAAAGGAGTGGGAGAACAAAAAAGAGTAAAATACGGAGCTGTATTTCTACAGGAGCTTCAAGCCTA
TAAAACTGAGAAAGAAGCATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(225-324)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)

RQC domain (RQC)

(403-509)

DEAD/DEAH box helicase (DEAD)

(20-182)

HRDC domain (HRDC)

(518-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65IL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

71.21

98.988

0.705