Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   SR852_RS14725 Genome accession   NZ_CP140161
Coordinates   2862954..2864957 (-) Length   667 a.a.
NCBI ID   WP_009328229.1    Uniprot ID   Q65J38
Organism   Bacillus licheniformis strain ATCC 14580     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2857954..2869957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS14675 (SR852_14675) sspO 2858300..2858446 (+) 147 WP_003182252.1 small acid-soluble spore protein O -
  SR852_RS14680 (SR852_14680) - 2858488..2858634 (+) 147 WP_003182250.1 small acid-soluble spore protein P -
  SR852_RS14685 (SR852_14685) - 2858770..2859177 (+) 408 WP_003182248.1 Hsp20/alpha crystallin family protein -
  SR852_RS14690 (SR852_14690) - 2859382..2859810 (+) 429 WP_003182245.1 DUF2621 domain-containing protein -
  SR852_RS14695 (SR852_14695) - 2859846..2860340 (-) 495 WP_085959522.1 CcdC family protein -
  SR852_RS14700 (SR852_14700) spo0A 2860414..2860785 (-) 372 WP_009328223.1 response regulator Regulator
  SR852_RS14705 (SR852_14705) - 2860867..2861574 (-) 708 WP_011198008.1 cytochrome c biogenesis protein CcdA -
  SR852_RS14710 (SR852_14710) - 2861817..2861978 (+) 162 WP_202604361.1 aspartyl-phosphate phosphatase Spo0E family protein -
  SR852_RS14715 (SR852_14715) - 2862059..2862277 (-) 219 WP_003182236.1 YneF family protein -
  SR852_RS14720 (SR852_14720) sirA 2862362..2862799 (-) 438 WP_003182234.1 sporulation inhibitor of replication protein SirA -
  SR852_RS14725 (SR852_14725) recP/tkt 2862954..2864957 (-) 2004 WP_009328229.1 transketolase Machinery gene
  SR852_RS14730 (SR852_14730) - 2865124..2865357 (-) 234 WP_003182231.1 DUF896 domain-containing protein -
  SR852_RS14735 (SR852_14735) - 2865423..2866070 (-) 648 WP_003182227.1 YneB family resolvase-like protein -
  SR852_RS14740 (SR852_14740) yneA 2866089..2866400 (-) 312 WP_003182225.1 cell division suppressor protein YneA -
  SR852_RS14745 (SR852_14745) dinR/lexA 2866553..2867176 (+) 624 WP_003182222.1 transcriptional repressor LexA Regulator
  SR852_RS14750 (SR852_14750) nucA/comI 2867372..2867800 (-) 429 WP_003182220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  SR852_RS14755 (SR852_14755) - 2868159..2868998 (-) 840 WP_003182218.1 thymidylate synthase -
  SR852_RS14760 (SR852_14760) - 2869058..2869819 (-) 762 WP_003182215.1 hypothetical protein -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 72636.78 Da        Isoelectric Point: 4.8350

>NTDB_id=833913 SR852_RS14725 WP_009328229.1 2862954..2864957(-) (recP/tkt) [Bacillus licheniformis strain ATCC 14580]
MKTIELKSVATIRTLSIDAIEKAKSGHPGMPMGTAPMAYALWTKMMNVSPENPNWFNRDRFVLSAGHGSMLLYSMLHLSG
YDVSIEDLKNFRQWGSKTPGHPEFGHTPGVDATTGPLGQGIGMAVGMALAERHLAETYNRDDYRVVDHYTYSICGDGDLM
EGISSEAASLAGHLNLGRLIVLYDSNDISLDGELNRSFSENVKQRFEAMNWEVLYVEDGNNIAEITAAIEKAKQNEKQPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGSEEAKLTKEAYEWTYEEDFYVPSEVYEHFNETVKEAGKKKEAEWNELFSAYKK
AHPELAEELELAIKGELPEGWDQKVPVYEKGSSLASRASSGEVLNGIAQQVPFFFGGSADLAGSNKTTIKNGGDVSAKDY
AGRNIWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPIEQLA
SLRALPNLSVIRPADGNETAAAWKLALQSKDQPTALVLTRQNLPTIDQSAETAYEGVKKGAYVVSKSQNEKPEAILLASG
SEVGLALDAQSELQKEGIDVSVVSVPSWDRFDKQPAEYKNAVLPTDVTKRLAIEMGSPLGWERYTGTDGDILGIDQFGAS
APGETIMKEYGFTPANVVDRVKKLLNR

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=833913 SR852_RS14725 WP_009328229.1 2862954..2864957(-) (recP/tkt) [Bacillus licheniformis strain ATCC 14580]
ATGAAAACGATTGAATTAAAATCTGTCGCAACAATACGAACACTCTCCATAGACGCGATTGAAAAAGCTAAATCCGGTCA
CCCCGGCATGCCGATGGGGACTGCTCCGATGGCTTATGCGCTTTGGACAAAAATGATGAATGTCAGCCCTGAAAATCCGA
ATTGGTTTAACAGGGACCGTTTTGTGCTTTCCGCCGGACACGGATCAATGCTTTTGTACAGCATGCTTCACTTAAGCGGA
TATGACGTTTCAATTGAAGACCTCAAAAATTTCCGCCAATGGGGAAGCAAAACTCCTGGGCATCCGGAATTCGGACATAC
TCCGGGTGTAGATGCGACTACAGGTCCGCTTGGCCAAGGAATCGGAATGGCTGTCGGAATGGCGCTTGCTGAACGTCACC
TTGCTGAAACTTACAACCGTGACGACTATCGCGTCGTTGACCATTATACATACAGCATTTGCGGTGACGGAGACTTGATG
GAGGGAATTTCATCCGAAGCGGCTTCGCTTGCGGGACATTTGAACCTCGGCCGTCTCATCGTGCTTTATGATTCAAATGA
CATTTCGCTTGACGGCGAACTAAACCGCTCATTCTCTGAAAATGTAAAGCAGCGCTTTGAAGCGATGAATTGGGAAGTGC
TTTATGTTGAAGACGGCAACAACATTGCCGAAATTACGGCGGCCATCGAGAAAGCGAAACAAAATGAAAAGCAGCCGACA
TTAATTGAAGTGAAAACAACGATCGGTTTCGGTTCTCCAAACCGTGCGGGCACATCCGGCGTCCACGGCGCTCCGCTCGG
ATCAGAAGAGGCGAAATTAACGAAGGAAGCGTATGAGTGGACATACGAAGAAGATTTTTATGTTCCTTCCGAAGTGTACG
AGCACTTTAACGAAACAGTGAAGGAAGCGGGCAAGAAAAAAGAGGCGGAATGGAACGAACTGTTCTCCGCATACAAGAAA
GCCCACCCGGAACTTGCCGAAGAGCTTGAACTGGCGATCAAAGGCGAGCTTCCTGAAGGATGGGATCAGAAAGTACCTGT
ATATGAAAAAGGAAGCAGCCTTGCTTCACGTGCATCCTCAGGTGAAGTGTTAAACGGAATCGCTCAACAAGTGCCGTTTT
TCTTTGGCGGATCCGCGGACTTGGCCGGTTCCAACAAAACGACAATCAAAAACGGCGGAGATGTTTCAGCGAAGGATTAC
GCCGGCAGAAATATCTGGTTCGGTGTAAGGGAATTTGCGATGGGAGCAGCTTTGAACGGAATGGCTCTTCACGGAGGCCT
CCGCGTATTCGGCGGAACGTTCTTCGTTTTCTCCGATTACTTGAGACCAGCGATTCGTCTTGCTGCATTGATGGGGCTTC
CTGTCACCTATGTATTTACACATGACAGCATTGCCGTCGGTGAAGACGGACCGACTCATGAGCCGATTGAACAGCTGGCA
TCACTTCGTGCGCTGCCGAACTTGTCCGTCATCAGACCTGCCGACGGAAATGAAACAGCAGCTGCCTGGAAGCTCGCGCT
TCAATCAAAAGACCAGCCGACTGCGCTTGTGTTGACACGCCAAAACTTGCCGACAATCGATCAGTCTGCTGAAACGGCTT
ATGAAGGCGTTAAAAAGGGTGCATATGTCGTTTCAAAAAGCCAAAACGAAAAACCGGAAGCGATCTTGCTTGCGAGCGGA
TCTGAAGTTGGCCTTGCGCTTGATGCACAAAGCGAGCTGCAAAAAGAAGGCATTGACGTATCCGTTGTCAGCGTTCCGTC
ATGGGATCGATTTGACAAGCAGCCGGCTGAATATAAAAACGCTGTTCTTCCAACTGATGTGACAAAGCGTCTCGCAATTG
AAATGGGATCGCCGCTCGGATGGGAGAGATATACAGGCACTGACGGGGACATTCTCGGAATCGACCAGTTCGGTGCATCA
GCTCCTGGCGAAACGATCATGAAAGAATACGGTTTTACGCCTGCGAATGTAGTTGACCGGGTGAAAAAACTGTTAAATCG
CTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(548-657)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65J38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

57.768

99.4

0.574