Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | VNTUMSATTG_RS05265 | Genome accession | NZ_AP024087 |
| Coordinates | 1107779..1108099 (+) | Length | 106 a.a. |
| NCBI ID | WP_022551233.1 | Uniprot ID | U4KDA9 |
| Organism | Vibrio nigripulchritudo strain TUMSAT-TG-2018 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1102779..1113099
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VNTUMSATTG_RS05255 (VNTUMSATTG_09860) | - | 1105181..1105453 (+) | 273 | WP_004406206.1 | HU family DNA-binding protein | - |
| VNTUMSATTG_RS05260 (VNTUMSATTG_09870) | ppiD | 1105781..1107652 (+) | 1872 | WP_200766880.1 | peptidylprolyl isomerase | - |
| VNTUMSATTG_RS05265 (VNTUMSATTG_09880) | comEA | 1107779..1108099 (+) | 321 | WP_022551233.1 | ComEA family DNA-binding protein | Machinery gene |
| VNTUMSATTG_RS05270 (VNTUMSATTG_09890) | rrtA | 1108156..1108722 (-) | 567 | WP_200766881.1 | rhombosortase | - |
| VNTUMSATTG_RS05275 (VNTUMSATTG_09900) | - | 1108711..1109331 (+) | 621 | WP_200766882.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| VNTUMSATTG_RS05280 (VNTUMSATTG_09910) | - | 1109364..1110683 (-) | 1320 | WP_200766883.1 | anti-phage deoxyguanosine triphosphatase | - |
| VNTUMSATTG_RS05285 (VNTUMSATTG_09920) | yfbR | 1110731..1111315 (-) | 585 | WP_004406194.1 | 5'-deoxynucleotidase | - |
| VNTUMSATTG_RS05290 (VNTUMSATTG_09930) | - | 1111463..1112677 (-) | 1215 | WP_200766884.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11208.93 Da Isoelectric Point: 9.8209
>NTDB_id=83375 VNTUMSATTG_RS05265 WP_022551233.1 1107779..1108099(+) (comEA) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MKIIKLALIAALSLCSAVSANAWESNSPSKAASSSDKHAGIEITVNINTATAEELQTLLIGIGAKKAKTIVEFREKNGLF
QSADDLSKVKGIGNATVDKNRDRILL
MKIIKLALIAALSLCSAVSANAWESNSPSKAASSSDKHAGIEITVNINTATAEELQTLLIGIGAKKAKTIVEFREKNGLF
QSADDLSKVKGIGNATVDKNRDRILL
Nucleotide
Download Length: 321 bp
>NTDB_id=83375 VNTUMSATTG_RS05265 WP_022551233.1 1107779..1108099(+) (comEA) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGAAAATCATAAAACTGGCTTTGATAGCCGCTCTTTCTCTTTGCTCTGCCGTATCTGCAAACGCGTGGGAGTCAAATTC
GCCATCTAAAGCGGCTTCAAGCAGTGATAAGCATGCTGGAATAGAAATTACCGTAAACATCAATACGGCGACCGCTGAGG
AGCTGCAAACGCTTTTAATCGGCATAGGTGCTAAGAAGGCGAAAACCATCGTAGAGTTTCGGGAAAAGAACGGGTTATTT
CAGTCTGCAGACGATTTGAGCAAAGTGAAGGGTATTGGCAACGCTACCGTTGACAAGAATCGTGACCGAATTCTGCTGTA
G
ATGAAAATCATAAAACTGGCTTTGATAGCCGCTCTTTCTCTTTGCTCTGCCGTATCTGCAAACGCGTGGGAGTCAAATTC
GCCATCTAAAGCGGCTTCAAGCAGTGATAAGCATGCTGGAATAGAAATTACCGTAAACATCAATACGGCGACCGCTGAGG
AGCTGCAAACGCTTTTAATCGGCATAGGTGCTAAGAAGGCGAAAACCATCGTAGAGTTTCGGGAAAAGAACGGGTTATTT
CAGTCTGCAGACGATTTGAGCAAAGTGAAGGGTATTGGCAACGCTACCGTTGACAAGAATCGTGACCGAATTCTGCTGTA
G
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae strain A1552 |
56.122 |
92.453 |
0.519 |
| comEA | Vibrio cholerae C6706 |
56.122 |
92.453 |
0.519 |
| comEA | Vibrio campbellii strain DS40M4 |
56.842 |
89.623 |
0.509 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
44.037 |
100 |
0.453 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
61.842 |
71.698 |
0.443 |
| comEA | Acinetobacter baylyi ADP1 |
50 |
75.472 |
0.377 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
62.903 |
58.491 |
0.368 |