Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QNH97_RS25430 Genome accession   NZ_CP125957
Coordinates   5806909..5807436 (-) Length   175 a.a.
NCBI ID   WP_283554434.1    Uniprot ID   -
Organism   Pseudomonas sp. G2-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5801909..5812436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH97_RS25405 (QNH97_25405) - 5801994..5802752 (-) 759 WP_283554429.1 alpha/beta fold hydrolase -
  QNH97_RS25410 (QNH97_25410) - 5802742..5803851 (-) 1110 WP_283554430.1 DUF3182 family protein -
  QNH97_RS25415 (QNH97_25415) - 5804153..5805148 (-) 996 WP_283554431.1 GlxA family transcriptional regulator -
  QNH97_RS25420 (QNH97_25420) - 5805246..5805800 (+) 555 WP_283554432.1 cysteine hydrolase family protein -
  QNH97_RS25425 (QNH97_25425) - 5806158..5806784 (+) 627 WP_283554433.1 hypothetical protein -
  QNH97_RS25430 (QNH97_25430) ssb 5806909..5807436 (-) 528 WP_283554434.1 single-stranded DNA-binding protein Machinery gene
  QNH97_RS25435 (QNH97_25435) - 5807446..5808843 (-) 1398 WP_283554435.1 MFS transporter -
  QNH97_RS25440 (QNH97_25440) uvrA 5809022..5811856 (+) 2835 WP_283554436.1 excinuclease ABC subunit UvrA -
  QNH97_RS25445 (QNH97_25445) bfr 5811937..5812401 (-) 465 WP_025215751.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19480.68 Da        Isoelectric Point: 5.9455

>NTDB_id=833672 QNH97_RS25430 WP_283554434.1 5806909..5807436(-) (ssb) [Pseudomonas sp. G2-4]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPAPRQQAPRPQQSAPQPQRERPAAPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=833672 QNH97_RS25430 WP_283554434.1 5806909..5807436(-) (ssb) [Pseudomonas sp. G2-4]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCGAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACAAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCTGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAGATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGTGACCAGCAACAAGGTGGCAACAACTACCAGCAATCGGCCCCAGCCCCAC
GTCAGCAGGCGCCTCGCCCACAGCAGTCGGCGCCACAGCCACAACGCGAGCGCCCGGCGGCCCCACAACAAGCCGCGCCG
CAACCGGCGCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.101

100

0.594
  ssb Glaesserella parasuis strain SC1401

48.37

100

0.509
  ssb Neisseria meningitidis MC58

48.889

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.889

100

0.503