Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMY55_RS24325 Genome accession   NZ_CP125947
Coordinates   5208328..5208873 (-) Length   181 a.a.
NCBI ID   WP_283486646.1    Uniprot ID   -
Organism   Comamonas resistens strain ZM22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5203328..5213873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY55_RS24300 (QMY55_24300) moaC 5203417..5203890 (+) 474 WP_283486641.1 cyclic pyranopterin monophosphate synthase MoaC -
  QMY55_RS24305 (QMY55_24305) - 5203975..5205372 (-) 1398 WP_283486642.1 sulfatase-like hydrolase/transferase -
  QMY55_RS24310 (QMY55_24310) - 5205359..5206498 (-) 1140 WP_283486643.1 serine hydrolase -
  QMY55_RS24315 (QMY55_24315) - 5206612..5207124 (-) 513 WP_283486644.1 pilin -
  QMY55_RS24320 (QMY55_24320) - 5207319..5208032 (-) 714 WP_283486645.1 FHA domain-containing protein -
  QMY55_RS24325 (QMY55_24325) ssb 5208328..5208873 (-) 546 WP_283486646.1 single-stranded DNA-binding protein Machinery gene
  QMY55_RS24330 (QMY55_24330) - 5208990..5210219 (-) 1230 WP_407650718.1 MFS transporter -
  QMY55_RS24335 (QMY55_24335) uvrA 5210392..5213433 (+) 3042 WP_283486647.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19826.89 Da        Isoelectric Point: 5.9603

>NTDB_id=833649 QMY55_RS24325 WP_283486646.1 5208328..5208873(-) (ssb) [Comamonas resistens strain ZM22]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNSGENREATEWHRVTFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDQATGQERYATEIRADTMQMLGSRQGGGQPQGGYGDDGYGETSYEAPRRAPAPAPMQQQRPAAPAARPAPAP
MSPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=833649 QMY55_RS24325 WP_283486646.1 5208328..5208873(-) (ssb) [Comamonas resistens strain ZM22]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATGCGCACCTTCCCCAGCGGTGATCA
GGTGGCCAATGTGACCATCGCCACGACTGACCGCTGGCGCGACAAGAATTCCGGTGAAAACCGCGAAGCCACCGAGTGGC
ACCGTGTGACTTTCAACGGCCGTCTTGCCGAGATCGCAGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGATCAGGCCACAGGCCAGGAGCGCTACGCCACCGAAATCCGTGCCGATACCATGCA
AATGCTGGGCAGCCGCCAAGGTGGCGGCCAGCCACAAGGCGGTTATGGCGACGACGGTTATGGCGAAACCAGCTATGAAG
CACCTCGCCGCGCACCTGCCCCAGCCCCCATGCAGCAACAGCGCCCGGCGGCGCCTGCTGCACGTCCCGCTCCTGCTCCC
ATGTCGCCACCTCCGCAGCGCGCGGCTTCGGGCTTTGACGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.91

100

0.552
  ssb Glaesserella parasuis strain SC1401

49.246

100

0.541
  ssb Neisseria gonorrhoeae MS11

46.809

100

0.486
  ssb Neisseria meningitidis MC58

44.681

100

0.464