Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QM337_RS01550 | Genome accession | NZ_CP125903 |
| Coordinates | 355015..355518 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain CHAL1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 350955..375184 | 355015..355518 | within | 0 |
Gene organization within MGE regions
Location: 350955..375184
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QM337_RS01520 (QM337_01520) | - | 350955..351800 (+) | 846 | WP_001573568.1 | ParB/RepB/Spo0J family partition protein | - |
| QM337_RS01525 (QM337_01525) | - | 351954..352835 (+) | 882 | WP_000373076.1 | mechanosensitive ion channel family protein | - |
| QM337_RS01530 (QM337_01530) | - | 352865..353068 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| QM337_RS01535 (QM337_01535) | ychF | 353080..354177 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| QM337_RS01540 (QM337_01540) | - | 354263..354454 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| QM337_RS01545 (QM337_01545) | rpsF | 354698..354994 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| QM337_RS01550 (QM337_01550) | ssbA | 355015..355518 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| QM337_RS01555 (QM337_01555) | rpsR | 355570..355812 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| QM337_RS01560 (QM337_01560) | - | 356044..356763 (-) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QM337_RS01565 (QM337_01565) | - | 356876..358090 (-) | 1215 | WP_000270135.1 | site-specific integrase | - |
| QM337_RS01570 (QM337_01570) | - | 358251..358874 (-) | 624 | WP_000230361.1 | helix-turn-helix transcriptional regulator | - |
| QM337_RS01575 (QM337_01575) | - | 359023..359187 (+) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| QM337_RS01580 (QM337_01580) | - | 359188..359460 (+) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| QM337_RS01585 (QM337_01585) | - | 359472..359645 (+) | 174 | WP_000784892.1 | hypothetical protein | - |
| QM337_RS01590 (QM337_01590) | - | 359612..359815 (+) | 204 | WP_001231376.1 | hypothetical protein | - |
| QM337_RS01595 (QM337_01595) | - | 359817..360200 (+) | 384 | WP_000403837.1 | hypothetical protein | - |
| QM337_RS01600 (QM337_01600) | - | 360201..360527 (+) | 327 | WP_001103967.1 | DUF1474 family protein | - |
| QM337_RS01605 (QM337_01605) | - | 360592..361461 (+) | 870 | WP_001002709.1 | primase alpha helix C-terminal domain-containing protein | - |
| QM337_RS01610 (QM337_01610) | - | 361475..363184 (+) | 1710 | WP_000447468.1 | DUF927 domain-containing protein | - |
| QM337_RS01615 (QM337_01615) | - | 363494..363874 (+) | 381 | WP_000356942.1 | hypothetical protein | - |
| QM337_RS01620 (QM337_01620) | - | 363871..364512 (+) | 642 | WP_001019762.1 | hypothetical protein | - |
| QM337_RS01625 (QM337_01625) | - | 365219..365563 (+) | 345 | WP_001288442.1 | hypothetical protein | - |
| QM337_RS01630 (QM337_01630) | - | 365594..366247 (+) | 654 | WP_000214170.1 | hypothetical protein | - |
| QM337_RS01635 (QM337_01635) | - | 366300..366827 (+) | 528 | WP_000771361.1 | spore coat protein | - |
| QM337_RS01640 (QM337_01640) | - | 366959..367171 (+) | 213 | WP_001656917.1 | hypothetical protein | - |
| QM337_RS01645 (QM337_01645) | - | 367168..367737 (+) | 570 | WP_001293071.1 | terminase small subunit | - |
| QM337_RS01650 (QM337_01650) | - | 367784..367867 (+) | 84 | Protein_327 | terminase small subunit | - |
| QM337_RS01655 (QM337_01655) | - | 368014..368982 (+) | 969 | WP_000801980.1 | Abi family protein | - |
| QM337_RS01660 (QM337_01660) | - | 369124..369561 (+) | 438 | WP_073392942.1 | DUF3102 domain-containing protein | - |
| QM337_RS01665 (QM337_01665) | - | 369679..370191 (+) | 513 | WP_000813311.1 | hypothetical protein | - |
| QM337_RS01670 (QM337_01670) | - | 370207..370386 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| QM337_RS01675 (QM337_01675) | - | 371150..372157 (-) | 1008 | WP_001080636.1 | Abi family protein | - |
| QM337_RS01680 (QM337_01680) | - | 372163..372821 (-) | 659 | Protein_333 | site-specific integrase | - |
| QM337_RS01685 (QM337_01685) | - | 373114..373482 (+) | 369 | WP_000849155.1 | YxeA family protein | - |
| QM337_RS01690 (QM337_01690) | - | 373663..374235 (+) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| QM337_RS01695 (QM337_01695) | - | 374373..374636 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| QM337_RS01700 (QM337_01700) | - | 374930..375184 (+) | 255 | WP_000466746.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=833582 QM337_RS01550 WP_000934799.1 355015..355518(+) (ssbA) [Staphylococcus aureus strain CHAL1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=833582 QM337_RS01550 WP_000934799.1 355015..355518(+) (ssbA) [Staphylococcus aureus strain CHAL1]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |