Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   U2W42_RS06710 Genome accession   NZ_CP140116
Coordinates   1314868..1315533 (-) Length   221 a.a.
NCBI ID   WP_047343325.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NV27     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1309868..1320533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2W42_RS06705 (U2W42_06705) hpf 1314240..1314788 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  U2W42_RS06710 (U2W42_06710) comFC/cflB 1314868..1315533 (-) 666 WP_047343325.1 ComF family protein Machinery gene
  U2W42_RS06715 (U2W42_06715) comFA/cflA 1315505..1316830 (-) 1326 WP_010922534.1 DEAD/DEAH box helicase Machinery gene
  U2W42_RS06720 (U2W42_06720) - 1316886..1317518 (+) 633 WP_009880468.1 YigZ family protein -
  U2W42_RS06725 (U2W42_06725) cysK 1317646..1318587 (+) 942 WP_010922535.1 cysteine synthase A -
  U2W42_RS06730 (U2W42_06730) - 1318605..1318982 (-) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  U2W42_RS06735 (U2W42_06735) - 1318982..1320382 (-) 1401 WP_011285657.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25162.47 Da        Isoelectric Point: 9.6756

>NTDB_id=833541 U2W42_RS06710 WP_047343325.1 1314868..1315533(-) (comFC/cflB) [Streptococcus pyogenes strain NV27]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILKAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=833541 U2W42_RS06710 WP_047343325.1 1314868..1315533(-) (comFC/cflB) [Streptococcus pyogenes strain NV27]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGACGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATCACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTAAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae D39

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae R6

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

41.176

100

0.412
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus mitis NCTC 12261

40.724

100

0.407