Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QM338_RS01605 Genome accession   NZ_CP125901
Coordinates   358701..359204 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain CHAL2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 358701..377563 358701..359204 within 0


Gene organization within MGE regions


Location: 358701..377563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM338_RS01605 (QM338_01605) ssbA 358701..359204 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  QM338_RS01610 (QM338_01610) rpsR 359256..359498 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  QM338_RS01615 (QM338_01615) - 359737..360637 (-) 901 Protein_321 Abi family protein -
  QM338_RS01620 (QM338_01620) - 360639..361853 (-) 1215 WP_031765313.1 site-specific integrase -
  QM338_RS01625 (QM338_01625) - 362117..362842 (-) 726 WP_000668215.1 helix-turn-helix transcriptional regulator -
  QM338_RS01630 (QM338_01630) - 363014..363226 (+) 213 WP_001245562.1 helix-turn-helix transcriptional regulator -
  QM338_RS01635 (QM338_01635) - 363227..363499 (+) 273 WP_001138300.1 helix-turn-helix domain-containing protein -
  QM338_RS01640 (QM338_01640) - 363511..363657 (+) 147 WP_000784875.1 hypothetical protein -
  QM338_RS01645 (QM338_01645) - 363650..363859 (+) 210 WP_001058486.1 hypothetical protein -
  QM338_RS01650 (QM338_01650) - 363862..364185 (+) 324 WP_001103945.1 DUF1474 family protein -
  QM338_RS01655 (QM338_01655) - 364250..365119 (+) 870 WP_031765319.1 primase alpha helix C-terminal domain-containing protein -
  QM338_RS01660 (QM338_01660) - 365136..366593 (+) 1458 WP_031765320.1 virulence-associated E family protein -
  QM338_RS01665 (QM338_01665) - 366894..367256 (+) 363 WP_031765322.1 hypothetical protein -
  QM338_RS01670 (QM338_01670) - 367258..367542 (+) 285 WP_000998179.1 hypothetical protein -
  QM338_RS01675 (QM338_01675) - 367539..368180 (+) 642 WP_031765326.1 pathogenicity island protein -
  QM338_RS01680 (QM338_01680) - 368888..369232 (+) 345 WP_001288441.1 hypothetical protein -
  QM338_RS01685 (QM338_01685) - 369267..369845 (+) 579 WP_031769358.1 hypothetical protein -
  QM338_RS01690 (QM338_01690) - 369845..370021 (+) 177 WP_001160678.1 hypothetical protein -
  QM338_RS01695 (QM338_01695) - 370074..370601 (+) 528 WP_031765331.1 spore coat protein -
  QM338_RS01700 (QM338_01700) - 370604..370945 (+) 342 WP_031769360.1 hypothetical protein -
  QM338_RS01705 (QM338_01705) - 370942..371511 (+) 570 WP_031765334.1 terminase small subunit -
  QM338_RS01710 (QM338_01710) tst 371666..372370 (-) 705 WP_001035599.1 toxic shock syndrome toxin TSST-1 -
  QM338_RS01715 (QM338_01715) - 372781..372945 (+) 165 WP_153153625.1 hypothetical protein -
  QM338_RS01720 (QM338_01720) - 373020..373223 (+) 204 Protein_342 enterotoxin type B -
  QM338_RS01725 (QM338_01725) - 373301..373858 (-) 558 WP_031765336.1 DUF4888 domain-containing protein -
  QM338_RS01730 (QM338_01730) - 374417..374836 (+) 420 WP_000273396.1 hypothetical protein -
  QM338_RS01735 (QM338_01735) - 374850..376019 (+) 1170 WP_001606776.1 DUF6575 domain-containing protein -
  QM338_RS01740 (QM338_01740) - 376589..377527 (-) 939 WP_001817700.1 Abi family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=833539 QM338_RS01605 WP_000934799.1 358701..359204(+) (ssbA) [Staphylococcus aureus strain CHAL2]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=833539 QM338_RS01605 WP_000934799.1 358701..359204(+) (ssbA) [Staphylococcus aureus strain CHAL2]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365