Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QM316_RS08815 | Genome accession | NZ_CP125862 |
| Coordinates | 1730220..1730723 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain 18-02202-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1709388..1734783 | 1730220..1730723 | within | 0 |
Gene organization within MGE regions
Location: 1709388..1734783
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QM316_RS08660 (QM316_08650) | - | 1709388..1709642 (-) | 255 | WP_000466742.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| QM316_RS08665 (QM316_08655) | - | 1709936..1710199 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| QM316_RS08670 (QM316_08660) | - | 1710337..1710909 (-) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| QM316_RS08675 (QM316_08665) | - | 1711090..1711458 (-) | 369 | WP_000849165.1 | YxeA family protein | - |
| QM316_RS08680 (QM316_08670) | selX | 1711827..1712438 (-) | 612 | WP_000475322.1 | staphylococcal enterotoxin-like toxin X | - |
| QM316_RS08685 (QM316_08675) | - | 1712638..1713338 (+) | 701 | Protein_1671 | tyrosine-type recombinase/integrase | - |
| QM316_RS08690 (QM316_08680) | - | 1713389..1714327 (+) | 939 | WP_072357673.1 | Abi family protein | - |
| QM316_RS08695 (QM316_08685) | - | 1715122..1715307 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| QM316_RS08700 (QM316_08690) | - | 1715309..1715419 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| QM316_RS08705 (QM316_08695) | - | 1715490..1715642 (-) | 153 | WP_001788502.1 | hypothetical protein | - |
| QM316_RS08710 (QM316_08700) | - | 1716017..1716574 (+) | 558 | WP_001035615.1 | DUF4888 domain-containing protein | - |
| QM316_RS08715 (QM316_08705) | seb | 1716652..1717452 (-) | 801 | WP_000278086.1 | staphylococcal enterotoxin type B | - |
| QM316_RS08720 (QM316_08710) | - | 1717760..1718329 (-) | 570 | WP_151366944.1 | terminase small subunit | - |
| QM316_RS08725 (QM316_08715) | - | 1718326..1718667 (-) | 342 | WP_000358778.1 | hypothetical protein | - |
| QM316_RS08730 (QM316_08720) | - | 1718670..1719197 (-) | 528 | WP_000771368.1 | spore coat protein | - |
| QM316_RS08735 (QM316_08725) | - | 1719250..1719903 (-) | 654 | WP_000214172.1 | hypothetical protein | - |
| QM316_RS08740 (QM316_08730) | - | 1719934..1720275 (-) | 342 | WP_001190614.1 | hypothetical protein | - |
| QM316_RS08745 (QM316_08735) | - | 1720725..1721366 (-) | 642 | WP_001047697.1 | hypothetical protein | - |
| QM316_RS08750 (QM316_08740) | - | 1721363..1721743 (-) | 381 | WP_000356942.1 | hypothetical protein | - |
| QM316_RS08755 (QM316_08745) | - | 1722053..1723762 (-) | 1710 | WP_000447469.1 | DUF927 domain-containing protein | - |
| QM316_RS08760 (QM316_08750) | - | 1723776..1724645 (-) | 870 | WP_001002702.1 | primase alpha helix C-terminal domain-containing protein | - |
| QM316_RS08765 (QM316_08755) | - | 1724710..1725036 (-) | 327 | WP_000383747.1 | DUF1474 family protein | - |
| QM316_RS08770 (QM316_08760) | - | 1725039..1725248 (-) | 210 | WP_001058495.1 | hypothetical protein | - |
| QM316_RS08775 (QM316_08765) | - | 1725241..1725387 (-) | 147 | WP_000784887.1 | hypothetical protein | - |
| QM316_RS08780 (QM316_08770) | - | 1725399..1725671 (-) | 273 | WP_001138298.1 | helix-turn-helix domain-containing protein | - |
| QM316_RS08785 (QM316_08775) | - | 1725672..1725884 (-) | 213 | WP_001063624.1 | helix-turn-helix transcriptional regulator | - |
| QM316_RS08790 (QM316_08780) | - | 1726033..1726767 (+) | 735 | WP_000142630.1 | helix-turn-helix transcriptional regulator | - |
| QM316_RS08795 (QM316_08785) | - | 1727066..1728280 (+) | 1215 | WP_000270126.1 | site-specific integrase | - |
| QM316_RS08800 (QM316_08790) | - | 1728283..1728981 (+) | 699 | WP_000608381.1 | DUF3800 domain-containing protein | - |
| QM316_RS08805 (QM316_08795) | - | 1728968..1729594 (+) | 627 | WP_000281092.1 | hypothetical protein | - |
| QM316_RS08810 (QM316_08800) | rpsR | 1729926..1730168 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| QM316_RS08815 (QM316_08805) | ssbA | 1730220..1730723 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| QM316_RS08820 (QM316_08810) | rpsF | 1730744..1731040 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| QM316_RS08825 (QM316_08815) | - | 1731284..1731475 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| QM316_RS08830 (QM316_08820) | ychF | 1731561..1732658 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| QM316_RS08835 (QM316_08825) | - | 1732670..1732873 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| QM316_RS08840 (QM316_08830) | - | 1732903..1733784 (-) | 882 | WP_000373075.1 | mechanosensitive ion channel family protein | - |
| QM316_RS08845 (QM316_08835) | - | 1733938..1734783 (-) | 846 | WP_001621659.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=833115 QM316_RS08815 WP_000934799.1 1730220..1730723(-) (ssbA) [Staphylococcus aureus strain 18-02202-1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=833115 QM316_RS08815 WP_000934799.1 1730220..1730723(-) (ssbA) [Staphylococcus aureus strain 18-02202-1]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |