Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LL063_RS01780 Genome accession   NZ_CP125808
Coordinates   365996..366469 (+) Length   157 a.a.
NCBI ID   WP_323616715.1    Uniprot ID   -
Organism   Erysipelothrix rhusiopathiae subsp. ohloneorum strain UCD-4724-06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 360996..371469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL063_RS01750 (LL063_01750) lysS 361287..362771 (+) 1485 WP_323616711.1 lysine--tRNA ligase -
  LL063_RS01755 (LL063_01755) - 362809..363348 (-) 540 WP_323616712.1 chromate transporter -
  LL063_RS01760 (LL063_01760) - 363332..363895 (-) 564 WP_323616713.1 chromate transporter -
  LL063_RS01765 (LL063_01765) - 363989..364840 (+) 852 WP_323616714.1 LysR family transcriptional regulator -
  LL063_RS01770 (LL063_01770) - 364902..365540 (+) 639 WP_003774352.1 IspD/TarI family cytidylyltransferase -
  LL063_RS01775 (LL063_01775) rpsF 365680..365970 (+) 291 WP_003774354.1 30S ribosomal protein S6 -
  LL063_RS01780 (LL063_01780) ssb 365996..366469 (+) 474 WP_323616715.1 single-stranded DNA-binding protein Machinery gene
  LL063_RS01785 (LL063_01785) rpsR 366487..366720 (+) 234 WP_323616717.1 30S ribosomal protein S18 -
  LL063_RS01790 (LL063_01790) - 366774..367313 (+) 540 WP_238000060.1 DUF2232 domain-containing protein -
  LL063_RS01795 (LL063_01795) - 367360..369315 (+) 1956 WP_323616719.1 DHH family phosphoesterase -
  LL063_RS01800 (LL063_01800) rplI 369317..369763 (+) 447 WP_323616720.1 50S ribosomal protein L9 -
  LL063_RS01805 (LL063_01805) dnaB 369775..371145 (+) 1371 WP_003774361.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17655.43 Da        Isoelectric Point: 4.4023

>NTDB_id=832898 LL063_RS01780 WP_323616715.1 365996..366469(+) (ssb) [Erysipelothrix rhusiopathiae subsp. ohloneorum strain UCD-4724-06]
MINRTILVGRLTRDPELRKTQTGKSVVSFTVACNRRFGQQDETDFINCVAWNQTNDFMANYLLKGALVGLEGRIQSRSYE
DATGKRVYVQEVVVDTLQSLESRAQRQEQGASQGQYQNQNSNQGGSSYTPSYQVDPEPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=832898 LL063_RS01780 WP_323616715.1 365996..366469(+) (ssb) [Erysipelothrix rhusiopathiae subsp. ohloneorum strain UCD-4724-06]
ATGATTAATCGCACTATATTAGTGGGTCGTTTAACTCGAGATCCAGAACTTCGTAAAACACAAACTGGTAAATCAGTCGT
TTCGTTTACTGTAGCGTGCAACCGCCGCTTTGGACAACAAGATGAAACTGATTTTATCAATTGTGTGGCTTGGAATCAAA
CAAATGATTTTATGGCAAATTACTTACTAAAGGGTGCTTTAGTAGGTCTAGAAGGTCGAATTCAATCGAGATCATATGAA
GACGCTACCGGTAAACGTGTATATGTTCAAGAGGTTGTTGTGGATACACTTCAATCACTCGAATCACGTGCACAACGTCA
AGAACAAGGCGCAAGCCAAGGTCAATATCAGAATCAAAACAGTAATCAAGGTGGATCAAGTTATACACCTTCATACCAAG
TTGATCCTGAACCATCATTCTCAATGGATGATGAGCCCGTTCTCGATATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.294

100

0.49
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.436

100

0.478
  ssb Neisseria meningitidis MC58

35.955

100

0.408
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.363