Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   QMO40_RS10045 Genome accession   NZ_CP125805
Coordinates   2093528..2094841 (+) Length   437 a.a.
NCBI ID   WP_283386193.1    Uniprot ID   -
Organism   Mannheimia bovis strain 39324.S-11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2088528..2099841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO40_RS10020 (QMO40_10020) - 2088696..2091245 (-) 2550 WP_283386188.1 penicillin-binding protein 1A -
  QMO40_RS10025 (QMO40_10025) - 2091371..2092072 (+) 702 WP_283386189.1 competence protein ComA -
  QMO40_RS10030 (QMO40_10030) - 2092048..2092569 (+) 522 WP_283386190.1 hypothetical protein -
  QMO40_RS10035 (QMO40_10035) - 2092571..2093104 (+) 534 WP_283386191.1 hypothetical protein -
  QMO40_RS10040 (QMO40_10040) - 2093106..2093519 (+) 414 WP_283386192.1 hypothetical protein -
  QMO40_RS10045 (QMO40_10045) comE 2093528..2094841 (+) 1314 WP_283386193.1 type IV pilus secretin PilQ Machinery gene
  QMO40_RS10050 (QMO40_10050) nusB 2094921..2095334 (+) 414 WP_283386194.1 transcription antitermination factor NusB -
  QMO40_RS10055 (QMO40_10055) thiL 2095397..2096377 (+) 981 WP_112110691.1 thiamine-phosphate kinase -
  QMO40_RS10060 (QMO40_10060) - 2096383..2096856 (+) 474 WP_283386195.1 phosphatidylglycerophosphatase A -
  QMO40_RS10065 (QMO40_10065) - 2096862..2097488 (+) 627 WP_283386196.1 LysE family transporter -
  QMO40_RS10070 (QMO40_10070) ruvA 2097597..2098202 (+) 606 WP_025236421.1 Holliday junction branch migration protein RuvA -
  QMO40_RS10075 (QMO40_10075) ruvB 2098213..2099217 (+) 1005 WP_025236422.1 Holliday junction branch migration DNA helicase RuvB -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 48328.40 Da        Isoelectric Point: 8.9090

>NTDB_id=832862 QMO40_RS10045 WP_283386193.1 2093528..2094841(+) (comE) [Mannheimia bovis strain 39324.S-11]
MFRVFLYLLFSSSLALADTISLAVKNAPTSLLLTYLSEETGKNIVLEDDIQTKSTLRLENKSIEEIFKTLSKVNKLSLTY
EGDIVYINKKEEKIADLNTIPITHLQNNGQNPPLVTTPKLMTKTIKLNYAKASEVIESLTKGSGTFLSENGYIHFDERSN
SLIIKDSAKSLQNIERLVKKLDQPTEQIAIEARIVTISSEHLQELGVRWGMFSRGAAHYKFGGRLEGNGLNNVANNLNVN
FPVANGASAVLQVASINSRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLG
LEVVPHLSTQNQILLDLVVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLAQKGEDKVPVLGSIPFIK
RLFSQTRDKISKRELVIFVTPYILQSNEKVSSTKKSK

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=832862 QMO40_RS10045 WP_283386193.1 2093528..2094841(+) (comE) [Mannheimia bovis strain 39324.S-11]
ATGTTCAGAGTTTTTCTTTATTTATTATTTAGCTCTTCATTAGCGTTGGCTGATACTATTTCTCTTGCAGTAAAAAATGC
ACCAACTTCACTTCTGCTTACTTATTTATCCGAAGAAACAGGGAAAAATATAGTATTAGAGGATGATATTCAAACTAAAT
CTACATTAAGATTAGAAAACAAATCTATTGAAGAGATATTTAAAACACTCAGCAAAGTGAATAAATTATCGCTCACTTAT
GAAGGTGATATTGTTTATATTAATAAGAAAGAAGAAAAAATAGCTGATTTGAATACAATACCTATTACCCATTTGCAAAA
TAACGGACAAAATCCACCGCTTGTAACCACTCCAAAGTTGATGACTAAAACGATAAAGCTCAATTATGCGAAAGCCTCAG
AAGTGATTGAATCTTTAACTAAAGGTAGTGGTACGTTTTTATCTGAGAATGGCTATATCCATTTTGATGAGCGAAGTAAT
AGCTTAATTATTAAAGATAGTGCGAAATCACTGCAAAATATTGAGCGATTAGTCAAAAAACTCGACCAACCTACAGAACA
AATTGCGATTGAAGCTCGCATCGTTACTATCAGTAGCGAACATTTGCAAGAACTGGGGGTGCGTTGGGGAATGTTTTCCA
GAGGAGCTGCTCACTATAAATTTGGCGGACGACTTGAAGGTAATGGATTAAATAATGTAGCCAATAATCTCAATGTGAAT
TTCCCTGTTGCGAATGGAGCTTCCGCCGTTTTACAAGTGGCTTCCATTAATAGCCGTGTGCTAGATTTGGAACTCAGTGC
ATTAGAGCAGGAAAACAGTGTGGAAATTATTGCTAGTCCTCGTCTTTTAACCACGAATAAAAAACCTGCAAGCATCAAGC
AAGGTACAGAAATTCCTTATGTAATGTATAACACCAAATCAGAAGCAACCGATGTCGAATTTAAAGAAGCGGTGTTAGGA
TTGGAAGTTGTTCCTCATCTTTCTACTCAAAATCAAATTTTGCTGGATTTAGTCGTAACCCAAAACTCGCCGAATTCTCA
ATCCGGTAGTAGCGGTTTAATTACTATTGATAAGCAAGAACTCAACACACAAGTTTTTGCTAAACACGGGGAAACTATTG
TATTAGGTGGAATTTTTCAACATTTAGCCCAAAAAGGGGAAGATAAAGTGCCTGTTTTAGGTTCAATTCCCTTTATTAAG
CGTTTATTCAGCCAAACTAGAGATAAAATCAGCAAACGAGAACTCGTCATTTTCGTTACTCCCTACATTCTTCAATCGAA
CGAAAAAGTAAGCAGTACGAAAAAATCAAAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(122-187)

Bacterial type II and III secretion system protein (Secretin)

(267-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

63.134

99.314

0.627
  comE Haemophilus influenzae Rd KW20

51.807

94.966

0.492
  comE Haemophilus influenzae 86-028NP

49.078

99.314

0.487
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

39.387

97.025

0.382
  pilQ Vibrio cholerae strain A1552

39.387

97.025

0.382
  pilQ Vibrio campbellii strain DS40M4

37.85

97.941

0.371