Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QMO40_RS00785 Genome accession   NZ_CP125805
Coordinates   155767..156111 (+) Length   114 a.a.
NCBI ID   WP_283386422.1    Uniprot ID   -
Organism   Mannheimia bovis strain 39324.S-11     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 150767..161111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO40_RS00760 (QMO40_00760) rpsL 151009..151383 (-) 375 WP_005708967.1 30S ribosomal protein S12 -
  QMO40_RS00765 (QMO40_00765) rfaC 151504..152463 (-) 960 WP_283386418.1 lipopolysaccharide heptosyltransferase RfaC -
  QMO40_RS00770 (QMO40_00770) waaF 152528..153565 (-) 1038 WP_283386419.1 lipopolysaccharide heptosyltransferase II -
  QMO40_RS00775 (QMO40_00775) - 153675..154094 (-) 420 WP_283386420.1 MliC family protein -
  QMO40_RS00780 (QMO40_00780) - 154151..155476 (-) 1326 WP_283386421.1 LysM-like peptidoglycan-binding domain-containing protein -
  QMO40_RS00785 (QMO40_00785) comEA/comE1 155767..156111 (+) 345 WP_283386422.1 helix-hairpin-helix domain-containing protein Machinery gene
  QMO40_RS00790 (QMO40_00790) asd 156290..157180 (+) 891 WP_283386423.1 archaetidylserine decarboxylase -
  QMO40_RS00795 (QMO40_00795) gshAB 157344..159620 (+) 2277 WP_283386424.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  QMO40_RS00800 (QMO40_00800) manX 159935..160912 (+) 978 WP_283386425.1 PTS mannose transporter subunit IIAB -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12076.77 Da        Isoelectric Point: 8.4930

>NTDB_id=832845 QMO40_RS00785 WP_283386422.1 155767..156111(+) (comEA/comE1) [Mannheimia bovis strain 39324.S-11]
MKIIKALSLSLLLGLSSYSLAQTAETAKVAETVPAQAVEQTTTQIQTSTNTVNINTATAAEIQDKLVGIGAKKAQAIVDY
RTKNGNFKSVEQLTEVSGIGQATLEKNRANIVLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=832845 QMO40_RS00785 WP_283386422.1 155767..156111(+) (comEA/comE1) [Mannheimia bovis strain 39324.S-11]
ATGAAAATCATCAAAGCACTAAGTTTAAGTTTGTTACTGGGTTTGTCTTCTTACAGCTTGGCACAAACCGCTGAAACCGC
TAAAGTGGCAGAAACAGTACCTGCTCAAGCGGTGGAGCAAACGACTACTCAAATTCAAACCAGTACTAATACGGTCAATA
TCAACACTGCAACAGCTGCGGAAATTCAAGATAAATTAGTTGGCATCGGTGCCAAAAAAGCCCAAGCAATTGTCGATTAC
CGTACCAAAAACGGCAATTTCAAAAGCGTGGAACAGCTAACCGAAGTATCCGGCATCGGGCAGGCAACCTTAGAGAAAAA
TCGAGCTAATATTGTTTTAGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(49-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.018

100

0.57
  comEA Vibrio cholerae C6706

47.706

95.614

0.456
  comEA Vibrio cholerae strain A1552

47.706

95.614

0.456
  comE1/comEA Haemophilus influenzae Rd KW20

66.154

57.018

0.377