Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U0533_RS03715 Genome accession   NZ_CP139953
Coordinates   721399..721935 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Nord1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 716399..726935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0533_RS03695 (U0533_03695) soxR 718127..718591 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  U0533_RS03700 (U0533_03700) soxS 718677..719000 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  U0533_RS03705 (U0533_03705) pdeC 719003..720589 (-) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  U0533_RS03710 (U0533_03710) yjcB 721019..721300 (+) 282 WP_001295689.1 YjcB family protein -
  U0533_RS03715 (U0533_03715) ssb 721399..721935 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  U0533_RS03720 (U0533_03720) uvrA 722190..725012 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  U0533_RS03725 (U0533_03725) yjbR 725047..725403 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  U0533_RS03730 (U0533_03730) yjbQ 725407..725823 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  U0533_RS03735 (U0533_03735) aphA 725934..726647 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=832832 U0533_RS03715 WP_000168305.1 721399..721935(-) (ssb) [Escherichia coli strain Nord1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=832832 U0533_RS03715 WP_000168305.1 721399..721935(-) (ssb) [Escherichia coli strain Nord1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGCCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489