Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QLQ05_RS21660 Genome accession   NZ_CP125762
Coordinates   4059981..4060430 (+) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis strain KRS015     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4054981..4065430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS21640 hxlR 4056191..4056553 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  QLQ05_RS21645 hxlA 4056786..4057418 (+) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  QLQ05_RS21650 hxlB 4057424..4057981 (+) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  QLQ05_RS21655 tlpC 4058092..4059813 (+) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  QLQ05_RS21660 nucA/comI 4059981..4060430 (+) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  QLQ05_RS21665 nin/comJ 4060457..4060855 (+) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  QLQ05_RS21670 bglC 4060892..4062325 (-) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  QLQ05_RS21675 yckD 4062479..4062811 (-) 333 WP_003246247.1 YckD family protein -
  QLQ05_RS21680 yckC 4062893..4063348 (-) 456 WP_003246356.1 RDD family protein -
  QLQ05_RS21685 - 4063367..4063564 (-) 198 WP_119122841.1 hypothetical protein -
  QLQ05_RS21690 yckB 4063726..4064589 (+) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  QLQ05_RS21695 yckA 4064599..4065279 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=832749 QLQ05_RS21660 WP_003246436.1 4059981..4060430(+) (nucA/comI) [Bacillus subtilis strain KRS015]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=832749 QLQ05_RS21660 WP_003246436.1 4059981..4060430(+) (nucA/comI) [Bacillus subtilis strain KRS015]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1