Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ULL23_RS14170 Genome accession   NZ_CP139891
Coordinates   2896658..2897287 (-) Length   209 a.a.
NCBI ID   WP_001524444.1    Uniprot ID   -
Organism   Escherichia coli strain ECO20     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2891658..2902287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ULL23_RS14155 (ULL23_14160) helD 2891900..2893954 (-) 2055 WP_001295938.1 DNA helicase IV -
  ULL23_RS14160 (ULL23_14165) yccF 2894077..2894523 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ULL23_RS14165 (ULL23_14170) yccS 2894533..2896695 (+) 2163 WP_001524445.1 YccS family putative transporter -
  ULL23_RS14170 (ULL23_14175) sxy/tfoX 2896658..2897287 (-) 630 WP_001524444.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ULL23_RS14175 (ULL23_14180) sulA 2897506..2898015 (+) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  ULL23_RS14180 (ULL23_14185) ompA 2898371..2899423 (+) 1053 WP_001346420.1 porin OmpA -
  ULL23_RS14185 (ULL23_14190) matP 2899499..2899951 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ULL23_RS14190 (ULL23_14195) ycbZ 2900137..2901897 (+) 1761 WP_000156502.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24190.10 Da        Isoelectric Point: 9.0428

>NTDB_id=832705 ULL23_RS14170 WP_001524444.1 2896658..2897287(-) (sxy/tfoX) [Escherichia coli strain ECO20]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=832705 ULL23_RS14170 WP_001524444.1 2896658..2897287(-) (sxy/tfoX) [Escherichia coli strain ECO20]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99