Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QLQ05_RS09235 Genome accession   NZ_CP125762
Coordinates   1738368..1739438 (+) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain KRS015     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1733368..1744438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS09205 yqgY 1733562..1733807 (-) 246 WP_003226300.1 DUF2626 domain-containing protein -
  QLQ05_RS09210 mgsR 1734039..1734419 (+) 381 WP_003230147.1 transcriptional regulator MgsR -
  QLQ05_RS09220 rsbRD 1734643..1735479 (+) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -
  QLQ05_RS09225 yqhB 1735532..1736860 (-) 1329 WP_009967730.1 hemolysin family protein -
  QLQ05_RS09230 corA 1737003..1737956 (+) 954 WP_004399136.1 magnesium transporter CorA -
  QLQ05_RS09235 comGA 1738368..1739438 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  QLQ05_RS09240 comGB 1739425..1740462 (+) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  QLQ05_RS09245 comGC 1740476..1740772 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  QLQ05_RS09250 comGD 1740762..1741193 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  QLQ05_RS09255 comGE 1741177..1741524 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  QLQ05_RS09260 comGF 1741550..1741933 (+) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  QLQ05_RS09265 comGG 1741934..1742308 (+) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  QLQ05_RS09270 spoIIT 1742379..1742558 (+) 180 WP_003230176.1 YqzE family protein -
  QLQ05_RS09275 yqzG 1742600..1742926 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  QLQ05_RS09280 tapA 1743198..1743959 (+) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=832703 QLQ05_RS09235 WP_004399124.1 1738368..1739438(+) (comGA) [Bacillus subtilis strain KRS015]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=832703 QLQ05_RS09235 WP_004399124.1 1738368..1739438(+) (comGA) [Bacillus subtilis strain KRS015]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGTTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACTAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1