Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QLQ05_RS00260 Genome accession   NZ_CP125762
Coordinates   51352..51870 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain KRS015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 46352..56870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS00240 yyzM 47426..47632 (+) 207 WP_003226838.1 DUF951 family protein -
  QLQ05_RS00245 yyaE 47683..49686 (+) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  QLQ05_RS00250 ychF 49813..50913 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  QLQ05_RS00255 rpsF 51024..51311 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  QLQ05_RS00260 ssbA 51352..51870 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  QLQ05_RS00265 rpsR 51914..52153 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  QLQ05_RS00270 xth 52218..52976 (+) 759 WP_003243194.1 exodeoxyribonuclease III -
  QLQ05_RS00275 ccpB 53035..53970 (+) 936 WP_003243573.1 transcriptional regulator CcpB -
  QLQ05_RS00280 yyaH 54026..54406 (+) 381 WP_003244460.1 VOC family protein -
  QLQ05_RS00285 maa 54424..54978 (+) 555 WP_003242928.1 sugar O-acetyltransferase -
  QLQ05_RS00290 yyaJ 55012..56367 (-) 1356 WP_003243011.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=832672 QLQ05_RS00260 WP_003219228.1 51352..51870(+) (ssbA) [Bacillus subtilis strain KRS015]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=832672 QLQ05_RS00260 WP_003219228.1 51352..51870(+) (ssbA) [Bacillus subtilis strain KRS015]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378