Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   U0450_RS00065 Genome accession   NZ_CP139863
Coordinates   11999..12679 (+) Length   226 a.a.
NCBI ID   WP_000286929.1    Uniprot ID   C1CE75
Organism   Streptococcus pneumoniae strain 15P2112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6999..17679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0450_RS00050 - 7430..8290 (+) 861 WP_000631540.1 methionyl aminopeptidase -
  U0450_RS00055 - 8669..9473 (+) 805 WP_322396542.1 IS5 family transposase -
  U0450_RS00060 pcrA 9665..11956 (+) 2292 WP_050233554.1 DNA helicase PcrA -
  U0450_RS00065 radC 11999..12679 (+) 681 WP_000286929.1 RadC family protein Machinery gene
  U0450_RS00070 - 12676..13365 (-) 690 WP_000743330.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  U0450_RS00075 - 13383..14024 (-) 642 WP_000653403.1 redox-sensing transcriptional repressor Rex -
  U0450_RS00080 - 14107..14322 (-) 216 WP_000462488.1 DUF4649 family protein -
  U0450_RS00085 - 14330..14677 (-) 348 WP_000863509.1 DUF1831 domain-containing protein -
  U0450_RS00090 - 14682..15797 (-) 1116 WP_000639662.1 cysteine desulfurase family protein -
  U0450_RS00095 - 15807..16766 (-) 960 WP_001283813.1 ribose-phosphate diphosphokinase -
  U0450_RS00100 - 16879..17448 (-) 570 WP_000681269.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25563.59 Da        Isoelectric Point: 7.1203

>NTDB_id=832382 U0450_RS00065 WP_000286929.1 11999..12679(+) (radC) [Streptococcus pneumoniae strain 15P2112]
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQVSVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=832382 U0450_RS00065 WP_000286929.1 11999..12679(+) (radC) [Streptococcus pneumoniae strain 15P2112]
ATGTACAGTATTTCATTCCAAGAAGATTCACTATTACCAAGAGAAAGGCTGGCCAAGGAAGGAGTTGAAGCGCTTAGTAA
CCAAGAGTTGCTAGCTATTTTACTCAGGACAGGAACACGTCAAGTTAGCGTTTTTGAAATTGCCCAAAAAGTCTTGAACA
ATCTTTCAAGCCTAACGGATTTGAAAAAAATGACCCTGCAGGAATTGCAGAGTTTGTCTGGTATTGGGCGTGTTAAGGCC
ATAGAATTACAAGCTATGATTGAACTGGGGCATCGTATTCACAAACACGAGACTCTTGAAATGGAAAGTATTCTCAGCAG
TCAAAAGTTGGCCAAGAAGATGCAGCAGGAATTAGGGGATAAAAAACAAGAGCACCTGGTGGCACTCTATCTCAATACTC
AAAATCAAATCATCCATCAGCAGACCATTTTTATCGGTTCTGTAACTCGTAGTATCGCTGAACCGCGAGAGATTCTTCAC
TATGCAATCAAGCATATGGCGACTTCTCTTATCTTGGTCCACAATCATCCTTCAGGAGCGGTAGCGCCTAGCCAAAATGA
TGATCATGTCACTAAACTTGTTAAAGAAGCCTGCGAACTGATGGGGATTGTTCTCTTGGACCATTTGATTGTCTCTCATT
CTAATTACTTTAGTTATCGTGAAAAGACAGATTTAATCTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(106-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CE75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

99.558

100

0.996
  radC Streptococcus pneumoniae R6

99.115

100

0.991
  radC Streptococcus pneumoniae D39

99.115

100

0.991
  radC Streptococcus gordonii str. Challis substr. CH1

76.106

100

0.761
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.095

92.92

0.447