Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QLH32_RS12405 Genome accession   NZ_CP125669
Coordinates   2604334..2606472 (+) Length   712 a.a.
NCBI ID   WP_283269333.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2599334..2611472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS12385 (QLH32_12385) pilM 2601315..2602373 (+) 1059 WP_283266464.1 pilus assembly protein PilM Machinery gene
  QLH32_RS12390 (QLH32_12390) pilN 2602373..2603005 (+) 633 WP_283266465.1 PilN domain-containing protein Machinery gene
  QLH32_RS12395 (QLH32_12395) pilO 2603002..2603745 (+) 744 WP_283266466.1 type 4a pilus biogenesis protein PilO Machinery gene
  QLH32_RS12400 (QLH32_12400) pilP 2603745..2604272 (+) 528 WP_283266467.1 pilus assembly protein PilP Machinery gene
  QLH32_RS12405 (QLH32_12405) pilQ 2604334..2606472 (+) 2139 WP_283269333.1 type IV pilus secretin PilQ Machinery gene
  QLH32_RS12410 (QLH32_12410) aroK 2606492..2607052 (+) 561 WP_283266468.1 shikimate kinase AroK -
  QLH32_RS12415 (QLH32_12415) aroB 2607074..2608156 (+) 1083 WP_283266469.1 3-dehydroquinate synthase -
  QLH32_RS12420 (QLH32_12420) - 2608176..2609054 (+) 879 WP_283266470.1 hypothetical protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 77535.95 Da        Isoelectric Point: 5.9301

>NTDB_id=832354 QLH32_RS12405 WP_283269333.1 2604334..2606472(+) (pilQ) [Acinetobacter sp. KCTC 92772]
MNHAFRQFSMGAVAVAMIQVASAQVSMTNIVPMSLADQGTEIRIMFNGLPPQPQAYQLEQPSRLILDFDKAQQSLKQTSI
PVSTSEASSIEVAADDQRSRVIVNLKDAGAFTTRVEGNTFVLKINSARSSAINVPAISHQPQQGVSNIGFQRGNQGEGLI
VIDLLGNNTPVDVQQQGSKIIVRTMGNKIPTHLARRLNTNDFATPVASVDAYNDKGNGVISIQSTGSYEYMAYQAENKLT
ISLKRPEDKSPLKTKAQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLSYAKAVDIEKLITQGKNSNTNNNGNSSSTNISNDTL
TGGLLSPRGTVSIDPRTNTLIINDTSQKIDQIRKMIDLLDVSVKQVMIEARIVSASTDFTKEMGVKWGVLSQGITNNSDL
LVGGSDTTLWNLRKPEKDDDRGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPK
VMTADKQPAKISSGTQIPYSSSTGSGANAVPKTEFIDATLTLDVTPSITPEGKVMMKLNIAKDSVGGSTPTGQLMINKNQ
IDTNILVDNGETVVLGGIFEQTNQNAQTKVPFLGDLPYIGRLFRRDSKTENKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=832354 QLH32_RS12405 WP_283269333.1 2604334..2606472(+) (pilQ) [Acinetobacter sp. KCTC 92772]
ATGAATCATGCATTCCGTCAGTTTTCTATGGGTGCTGTTGCCGTCGCAATGATACAGGTTGCATCAGCACAAGTGAGTAT
GACCAATATTGTACCGATGAGTTTAGCTGATCAAGGTACGGAAATCCGTATCATGTTTAATGGCTTGCCTCCCCAACCAC
AGGCATATCAGCTTGAACAACCTTCCCGTCTAATCCTGGATTTTGATAAGGCACAGCAAAGTCTAAAGCAAACCTCAATT
CCTGTCTCAACTAGCGAGGCAAGCTCTATAGAAGTTGCTGCAGATGATCAACGTTCGCGTGTGATCGTAAATTTAAAAGA
TGCAGGTGCGTTTACTACTCGTGTAGAGGGCAATACGTTCGTTCTCAAAATTAATTCGGCTCGGTCATCTGCAATAAATG
TTCCAGCTATATCTCATCAGCCACAACAAGGCGTTTCAAATATTGGTTTTCAGCGTGGAAATCAAGGAGAGGGTTTAATT
GTTATTGATTTGTTGGGGAACAATACGCCTGTCGATGTACAGCAGCAAGGCAGTAAGATTATAGTCCGGACGATGGGAAA
TAAAATTCCAACACATTTAGCTCGTCGTTTAAATACAAATGATTTTGCTACTCCTGTGGCTAGTGTTGATGCGTATAATG
ATAAAGGTAATGGTGTAATTTCCATACAATCTACTGGTAGTTATGAGTATATGGCTTATCAAGCAGAGAATAAGCTTACT
ATCAGCTTAAAACGCCCTGAAGATAAATCACCACTTAAAACTAAGGCACAGACCTATACCGGGAATAAAATTTCTTTAGA
TTTTCAGGATATCGAAGTGCGTCGTGTATTGCAGTTGCTTGCAGACTTTACAGGTATCAATATGGTGGCGGCAGATACTG
TGCAAGGTAATATTACTCTTCGTTTAAAGGATGTGCCTTGGGATCAAGCGTTGGATATTGTATTAAAAACCAAAAACCTG
GATAAACGCCGTAATGGGAATGTAATTTGGATTGCACCTGTTTCTGAGTTGATTAAAGCAGAAGAAGAAGAAGCTAAAGC
AATTGCACAGAGTGTTAAACTAGCTCCATTGCAAACTGAATATATTCAATTAAGTTACGCAAAAGCGGTTGATATTGAGA
AATTGATTACTCAAGGTAAAAATAGTAATACGAATAATAATGGCAATTCATCTAGCACAAATATTAGTAATGATACATTA
ACTGGTGGTTTATTAAGCCCACGTGGTACTGTTTCAATAGATCCTCGCACAAATACTTTAATTATTAATGATACATCTCA
GAAAATTGATCAAATTCGCAAAATGATAGATCTATTAGATGTTTCAGTTAAGCAAGTCATGATTGAGGCACGTATTGTCA
GTGCAAGTACTGATTTCACTAAAGAAATGGGCGTGAAATGGGGCGTACTTTCACAGGGTATTACTAATAATAGTGACTTA
TTGGTTGGTGGTAGTGATACGACATTATGGAATCTTAGAAAACCTGAGAAAGATGATGATAGAGGTGGTTGGAAGTATGA
GATTGAACGTCCAGATAATCTCAATGTGGATTTGGGTGCTGTAACCCCAGGGGCAAGTCGTATCGCCTTTGGTTTAATTA
GCTTGTCTGATTTTATGCTTGATCTAGAGCTTTCGGCTGTACAGGCAGATGGCTATGGTGAAGTGATTTCAACACCAAAA
GTGATGACTGCAGATAAACAGCCTGCAAAAATTTCATCAGGTACACAAATTCCTTATTCATCCTCCACAGGTAGTGGTGC
AAATGCGGTACCGAAAACTGAGTTTATTGATGCAACCTTGACACTGGATGTCACACCAAGCATCACCCCTGAAGGTAAGG
TCATGATGAAGCTGAATATTGCCAAGGATTCAGTGGGTGGTTCAACACCAACAGGCCAACTTATGATCAATAAAAACCAG
ATAGATACCAATATCTTGGTAGATAATGGTGAAACAGTGGTGTTAGGGGGGATTTTTGAACAGACGAACCAAAATGCACA
AACTAAAGTACCATTCTTAGGAGATTTGCCATATATAGGTAGGCTCTTCCGTCGTGATTCCAAGACTGAAAATAAACGTG
AACTGCTTATTTTTGTAACTCCGAGAATTGTTAATGACACTTTGACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(546-704)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-445)

AMIN domain (AMIN)

(37-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.62

100

0.771
  pilQ Acinetobacter baumannii strain A118

75.482

100

0.77
  comQ Acinetobacter baylyi ADP1

73.669

100

0.739
  pilQ Pseudomonas aeruginosa PAK

39.569

100

0.413