Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QLH32_RS11805 Genome accession   NZ_CP125669
Coordinates   2485141..2485737 (+) Length   198 a.a.
NCBI ID   WP_283266388.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2480141..2490737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS11780 (QLH32_11780) - 2480517..2481089 (+) 573 WP_283266386.1 DUF2939 domain-containing protein -
  QLH32_RS11785 (QLH32_11785) - 2481144..2481497 (+) 354 WP_283266387.1 DUF1304 domain-containing protein -
  QLH32_RS11790 (QLH32_11790) tenA 2481643..2482317 (-) 675 WP_283269329.1 thiaminase II -
  QLH32_RS11795 (QLH32_11795) - 2482493..2483575 (+) 1083 WP_279958760.1 DUF475 domain-containing protein -
  QLH32_RS11800 (QLH32_11800) - 2483728..2485089 (+) 1362 WP_279958759.1 MFS transporter -
  QLH32_RS11805 (QLH32_11805) ssb 2485141..2485737 (+) 597 WP_283266388.1 single-stranded DNA-binding protein Machinery gene
  QLH32_RS11810 (QLH32_11810) - 2485893..2487119 (+) 1227 WP_279958758.1 site-specific integrase -
  QLH32_RS11815 (QLH32_11815) - 2487112..2488668 (+) 1557 WP_279958757.1 site-specific integrase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21678.43 Da        Isoelectric Point: 6.4820

>NTDB_id=832349 QLH32_RS11805 WP_283266388.1 2485141..2485737(+) (ssb) [Acinetobacter sp. KCTC 92772]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWVDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGEQGFAGGNDFNQPRFNNNNNQGGGYQNTGFNNNQNGYGQGGGFSGG
NQSNYAGSPQAGNGFNTPKAAPQPAAAAPADLDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=832349 QLH32_RS11805 WP_283266388.1 2485141..2485737(+) (ssb) [Acinetobacter sp. KCTC 92772]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTAGGTCGGGATCCGGAAACAAAAACCTTTCCAAATGGTGGATC
ATTAACCCAGTTTTCGATTGCAACAAGTGAATCGTGGGTAGATAAGAATACAGGTGAGCGTAAGGAACAAACGGAATGGC
ACCGCATTGTGCTGCACAACCGTTTGGGTGAGATTGCACAACAATATCTGCGTAAAGGTTCAAAAGTCTATATTGAGGGT
TCATTGCGTACACGCCAGTGGACGGATCAGAATGGTCAGGAGCGCTACAGCACCGAAATCCGTGGTGACCAAATGCAGAT
GCTTGATTCACGCCAGCAAGGTGAACAGGGCTTTGCGGGTGGCAATGACTTCAACCAGCCACGATTTAACAACAATAACA
ATCAGGGTGGCGGTTACCAGAATACAGGCTTTAACAATAACCAGAATGGTTATGGTCAAGGCGGTGGCTTTTCTGGTGGA
AACCAGAGCAACTATGCAGGTAGCCCACAGGCAGGCAATGGTTTTAATACACCAAAAGCAGCACCACAACCTGCGGCGGC
GGCCCCTGCGGATTTAGATGATGATTTACCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.465

100

0.545
  ssb Vibrio cholerae strain A1552

43.415

100

0.449
  ssb Neisseria meningitidis MC58

39.487

98.485

0.389
  ssb Neisseria gonorrhoeae MS11

38.974

98.485

0.384