Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFX16_RS25980 Genome accession   NZ_CP125619
Coordinates   5617187..5617714 (-) Length   175 a.a.
NCBI ID   WP_283181870.1    Uniprot ID   -
Organism   Pseudomonas svalbardensis strain PMCC 200367     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5612187..5622714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX16_RS25960 - 5613420..5614382 (+) 963 WP_283181868.1 diiron oxygenase -
  QFX16_RS25965 - 5614379..5615440 (+) 1062 WP_283181869.1 2Fe-2S iron-sulfur cluster-binding protein -
  QFX16_RS25970 - 5615478..5616188 (+) 711 WP_123359023.1 glutamine amidotransferase -
  QFX16_RS25975 - 5616268..5616636 (+) 369 WP_123359022.1 antibiotic biosynthesis monooxygenase -
  QFX16_RS25980 ssb 5617187..5617714 (-) 528 WP_283181870.1 single-stranded DNA-binding protein Machinery gene
  QFX16_RS25985 - 5617724..5619121 (-) 1398 WP_095131472.1 MFS transporter -
  QFX16_RS25990 uvrA 5619313..5622147 (+) 2835 WP_283181871.1 excinuclease ABC subunit UvrA -
  QFX16_RS25995 bfr 5622211..5622675 (-) 465 WP_007943775.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19428.56 Da        Isoelectric Point: 5.2868

>NTDB_id=831960 QFX16_RS25980 WP_283181870.1 5617187..5617714(-) (ssb) [Pseudomonas svalbardensis strain PMCC 200367]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQDGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPAPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=831960 QFX16_RS25980 WP_283181870.1 5617187..5617714(-) (ssb) [Pseudomonas svalbardensis strain PMCC 200367]
ATGGCCCGTGGGGTTAACAAAGTCATACTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAAGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGACCAACAAGACGGGGGCAACAACTACCAGCAGTCCGCCCCGGCCC
CACGCCAACAGGCCCCGCGTCCGCAGCAGTCGGCACCGCAACAGTCGCGCCAGGCACCAGCTCCACAGCAGGCCGCTCCG
CAGCCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.6
  ssb Glaesserella parasuis strain SC1401

48.108

100

0.509
  ssb Neisseria meningitidis MC58

47.222

100

0.486
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.486