Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFW87_RS26335 Genome accession   NZ_CP125618
Coordinates   5738883..5739410 (-) Length   175 a.a.
NCBI ID   WP_016969466.1    Uniprot ID   A0A0J6H7U2
Organism   Pseudomonas sp. PMCC200344     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5733883..5744410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW87_RS26315 - 5734176..5734604 (+) 429 WP_131062034.1 DUF350 domain-containing protein -
  QFW87_RS26320 - 5734623..5735336 (+) 714 WP_283181856.1 DUF1190 domain-containing protein -
  QFW87_RS26325 - 5735349..5736506 (+) 1158 WP_283189238.1 glutathionylspermidine synthase family protein -
  QFW87_RS26330 - 5736613..5738817 (+) 2205 WP_129440772.1 OsmC domain/YcaO domain-containing protein -
  QFW87_RS26335 ssb 5738883..5739410 (-) 528 WP_016969466.1 single-stranded DNA-binding protein Machinery gene
  QFW87_RS26340 - 5739420..5740817 (-) 1398 WP_095131472.1 MFS transporter -
  QFW87_RS26345 uvrA 5741009..5743843 (+) 2835 WP_283181871.1 excinuclease ABC subunit UvrA -
  QFW87_RS26350 bfr 5743907..5744371 (-) 465 WP_007943775.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19370.52 Da        Isoelectric Point: 5.9314

>NTDB_id=831930 QFW87_RS26335 WP_016969466.1 5738883..5739410(-) (ssb) [Pseudomonas sp. PMCC200344]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPAPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=831930 QFW87_RS26335 WP_016969466.1 5738883..5739410(-) (ssb) [Pseudomonas sp. PMCC200344]
ATGGCCCGTGGGGTTAACAAAGTCATACTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAAGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGGGGCAACAACTACCAGCAGTCCGCCCCGGCCC
CACGCCAACAGGCCCCGCGTCCGCAGCAGTCGGCACCGCAACAGTCGCGCCAGGCACCAGCTCCACAGCAGGCCGCTCCG
CAGCCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6H7U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.889

100

0.606
  ssb Glaesserella parasuis strain SC1401

48.634

100

0.509
  ssb Neisseria meningitidis MC58

47.222

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.486