Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMK55_RS10065 Genome accession   NZ_CP125378
Coordinates   2224167..2224685 (-) Length   172 a.a.
NCBI ID   WP_007966163.1    Uniprot ID   A0A031FLF5
Organism   Pseudomonas sp. P8_229     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2219167..2229685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK55_RS10035 (QMK55_10030) - 2219542..2220210 (+) 669 WP_102354606.1 YjfI family protein -
  QMK55_RS10040 (QMK55_10035) - 2220228..2220926 (+) 699 WP_102354607.1 PspA/IM30 family protein -
  QMK55_RS10045 (QMK55_10040) - 2221136..2221786 (+) 651 WP_102354608.1 DUF2491 family protein -
  QMK55_RS10050 (QMK55_10045) - 2221801..2222226 (+) 426 WP_025109509.1 DUF350 domain-containing protein -
  QMK55_RS10055 (QMK55_10050) - 2222244..2222930 (+) 687 WP_102354609.1 DUF1190 domain-containing protein -
  QMK55_RS10060 (QMK55_10055) - 2222933..2224090 (+) 1158 WP_102354610.1 glutathionylspermidine synthase family protein -
  QMK55_RS10065 (QMK55_10060) ssb 2224167..2224685 (-) 519 WP_007966163.1 single-stranded DNA-binding protein Machinery gene
  QMK55_RS10070 (QMK55_10065) - 2224695..2226092 (-) 1398 WP_025109506.1 MFS transporter -
  QMK55_RS10075 (QMK55_10070) uvrA 2226284..2229118 (+) 2835 WP_025109505.1 excinuclease ABC subunit UvrA -
  QMK55_RS10080 (QMK55_10075) bfr 2229182..2229646 (-) 465 WP_320329122.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19125.28 Da        Isoelectric Point: 5.9314

>NTDB_id=831619 QMK55_RS10065 WP_007966163.1 2224167..2224685(-) (ssb) [Pseudomonas sp. P8_229]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRPAPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=831619 QMK55_RS10065 WP_007966163.1 2224167..2224685(-) (ssb) [Pseudomonas sp. P8_229]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGCAGGCTCCACGTC
AGCAGGCTCCACGCCCGCAGCAGTCGGCTCCGCAACAGCGCCCGGCCCCGGCTCCACAGCAAGCCGCGCCGCAACCGGCT
CCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031FLF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.923

100

0.616
  ssb Glaesserella parasuis strain SC1401

49.451

100

0.523
  ssb Neisseria meningitidis MC58

47.514

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.5