Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QMK58_RS25645 Genome accession   NZ_CP125377
Coordinates   5719529..5720866 (+) Length   445 a.a.
NCBI ID   WP_053162514.1    Uniprot ID   -
Organism   Pseudomonas sp. P8_241     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5714529..5725866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK58_RS25620 (QMK58_25620) pgeF 5714740..5715465 (-) 726 WP_053162505.1 peptidoglycan editing factor PgeF -
  QMK58_RS25625 (QMK58_25625) rluD 5715462..5716424 (-) 963 WP_053162507.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QMK58_RS25630 (QMK58_25630) - 5716576..5717598 (+) 1023 WP_320395600.1 outer membrane protein assembly factor BamD -
  QMK58_RS25635 (QMK58_25635) - 5717723..5717956 (+) 234 WP_082344551.1 PP0621 family protein -
  QMK58_RS25640 (QMK58_25640) pilS 5717946..5719532 (+) 1587 WP_053162512.1 sensor histidine kinase Regulator
  QMK58_RS25645 (QMK58_25645) pilR 5719529..5720866 (+) 1338 WP_053162514.1 sigma-54-dependent transcriptional regulator Regulator
  QMK58_RS25650 (QMK58_25650) thiO 5720957..5722057 (-) 1101 WP_320395601.1 glycine oxidase ThiO -
  QMK58_RS25655 (QMK58_25655) - 5722115..5722516 (-) 402 WP_053162518.1 type IV pilin protein -
  QMK58_RS25660 (QMK58_25660) - 5722531..5722818 (-) 288 WP_256220755.1 hypothetical protein -
  QMK58_RS25665 (QMK58_25665) - 5722934..5723398 (-) 465 WP_053162522.1 PilX N-terminal domain-containing pilus assembly protein -
  QMK58_RS25670 (QMK58_25670) - 5723409..5724116 (-) 708 WP_053162524.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QMK58_RS25675 (QMK58_25675) pilV 5724113..5724562 (-) 450 WP_320395602.1 type IV pilus modification protein PilV -
  QMK58_RS25680 (QMK58_25680) - 5724559..5725032 (-) 474 WP_320395603.1 GspH/FimT family pseudopilin -
  QMK58_RS25685 (QMK58_25685) - 5725163..5725702 (+) 540 WP_053162529.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49557.21 Da        Isoelectric Point: 7.4564

>NTDB_id=831599 QMK58_RS25645 WP_053162514.1 5719529..5720866(+) (pilR) [Pseudomonas sp. P8_241]
MNTGTRKKVLVVDDEPDIRELLEITLGRMKLDTFSARNVAEALALLKRETFDLCLTDMRLPDGTGLELVQHIQQFYPQVP
VAMITAYGSLDTAISALKAGAFDFLTKPVDLTRLRELVTSALLLPLAGVAIDRRLLGNSLPMRTLRKHITKLARSQAPVY
ISGESGSGKELVARLIHDQGPRGGQPFVPINCGAIPSELMESEFFGHRKGSFSGAMEDKPGLFQAAQGGTLFLDEVADLP
LAMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLNAEVAAERFRQDLYYRLNVIELPVPPLRERRDDIEALSSHM
LKRLAANTGQAEVKLHPQALDVLKSYRFPGNVRELENMLERAHTLCENKQIEAGDLRLAEGNCAVGDGLPDLTQIHNLEA
YLENVERQLLLQALEQTRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=831599 QMK58_RS25645 WP_053162514.1 5719529..5720866(+) (pilR) [Pseudomonas sp. P8_241]
TTGAATACCGGCACACGGAAAAAAGTATTGGTCGTCGACGACGAGCCGGACATTCGCGAACTCCTGGAAATTACTCTGGG
ACGAATGAAACTCGATACGTTCAGCGCCCGCAATGTCGCCGAGGCTCTGGCTCTGCTGAAGCGCGAAACCTTCGATTTGT
GCCTGACCGACATGCGCTTGCCGGACGGTACCGGCCTTGAGCTCGTGCAGCACATCCAACAATTTTATCCACAGGTGCCG
GTGGCAATGATCACTGCCTATGGCAGCCTGGACACCGCGATCAGCGCACTCAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTGGACCTCACACGCCTGCGTGAACTGGTCACCAGTGCCCTGCTGCTTCCCCTTGCCGGCGTCGCCATTGACCGAC
GCCTGCTCGGTAATTCGTTGCCCATGCGCACTCTGCGCAAGCACATCACTAAACTGGCCCGTAGTCAGGCACCGGTTTAC
ATCAGCGGTGAATCCGGTAGCGGCAAAGAATTAGTCGCGCGCCTGATCCATGACCAAGGCCCCCGCGGCGGCCAACCGTT
CGTCCCGATCAATTGCGGAGCGATCCCGTCGGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGCAAAGGCAGCTTCAGCG
GCGCCATGGAAGATAAACCCGGCCTGTTCCAGGCGGCCCAGGGCGGCACTCTTTTCCTTGACGAAGTGGCTGATTTACCG
CTGGCGATGCAGGTGAAACTGTTACGTGCCATTCAGGAAAAAGCCGTGCGCAGTGTCGGTGGGCAGCAGGAAACGGTAGT
TGACGTGCGCATCCTTTGCGCTACGCACAAGGACTTGAATGCGGAAGTTGCTGCCGAGCGCTTTCGACAGGATCTGTATT
ACCGCTTGAACGTCATAGAGCTGCCAGTCCCCCCTTTGCGCGAACGACGCGATGACATCGAAGCACTGTCCAGCCACATG
CTGAAACGCCTCGCCGCCAACACCGGTCAAGCGGAGGTAAAACTCCATCCGCAAGCCCTCGACGTGCTCAAAAGCTACCG
TTTCCCCGGCAATGTCCGGGAACTGGAAAACATGCTCGAGCGAGCGCATACGCTATGCGAAAACAAGCAGATCGAAGCCG
GCGACCTGCGCCTGGCCGAAGGCAATTGCGCTGTTGGAGATGGCCTGCCAGACCTGACTCAGATCCACAATCTGGAAGCC
TACCTGGAAAACGTCGAACGCCAGTTACTGCTTCAGGCATTGGAGCAAACCCGCTGGAACCGCACGGCGGCGGCTCAGCG
GCTGAACCTTTCATTCAGGTCGATGCGTTACCGACTGAAGAAACTGGGGCTGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

76.802

99.775

0.766
  pilR Acinetobacter baumannii strain A118

48.802

100

0.503
  luxO Vibrio cholerae strain A1552

37.02

99.551

0.369