Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMK51_RS03430 Genome accession   NZ_CP125375
Coordinates   748646..749170 (+) Length   174 a.a.
NCBI ID   WP_007896798.1    Uniprot ID   A0A423J1F9
Organism   Pseudomonas sp. P9_31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 743646..754170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK51_RS03415 (QMK51_03420) bfr 743676..744140 (+) 465 WP_258698832.1 bacterioferritin -
  QMK51_RS03420 (QMK51_03425) uvrA 744213..747047 (-) 2835 WP_320393154.1 excinuclease ABC subunit UvrA -
  QMK51_RS03425 (QMK51_03430) - 747239..748636 (+) 1398 WP_320393155.1 MFS transporter -
  QMK51_RS03430 (QMK51_03435) ssb 748646..749170 (+) 525 WP_007896798.1 single-stranded DNA-binding protein Machinery gene
  QMK51_RS03435 (QMK51_03440) tssI 749890..751956 (+) 2067 WP_320393156.1 type VI secretion system Vgr family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19299.44 Da        Isoelectric Point: 5.9314

>NTDB_id=831532 QMK51_RS03430 WP_007896798.1 748646..749170(+) (ssb) [Pseudomonas sp. P9_31]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRPAPQQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=831532 QMK51_RS03430 WP_007896798.1 748646..749170(+) (ssb) [Pseudomonas sp. P9_31]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAAATTGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGATATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAATCCGCCCCAGCCC
CACGTCAGCAGGCTCCGCGTCCGCAGCAGTCGGCACCGCAACAGTCGCGCCCGGCTCCACAGCAGCAGGCCGCTCCTCAG
CCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A423J1F9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.757

100

0.598
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.511
  ssb Neisseria meningitidis MC58

47.514

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.494