Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U0546_RS19155 Genome accession   NZ_CP139794
Coordinates   3862683..3863219 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Nord8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3857683..3868219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0546_RS19135 (U0546_19135) soxR 3859412..3859876 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  U0546_RS19140 (U0546_19140) soxS 3859962..3860285 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  U0546_RS19145 (U0546_19145) pdeC 3860288..3861874 (-) 1587 WP_001296644.1 c-di-GMP phosphodiesterase PdeC -
  U0546_RS19150 (U0546_19150) yjcB 3862303..3862584 (+) 282 WP_001296643.1 YjcB family protein -
  U0546_RS19155 (U0546_19155) ssb 3862683..3863219 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  U0546_RS19160 (U0546_19160) uvrA 3863474..3866296 (+) 2823 WP_000357755.1 excinuclease ABC subunit UvrA Machinery gene
  U0546_RS19165 (U0546_19165) yjbR 3866331..3866687 (-) 357 WP_000153726.1 MmcQ/YjbR family DNA-binding protein -
  U0546_RS19170 (U0546_19170) yjbQ 3866691..3867107 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  U0546_RS19175 (U0546_19175) aphA 3867218..3867931 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=831513 U0546_RS19155 WP_000168305.1 3862683..3863219(-) (ssb) [Escherichia coli strain Nord8]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=831513 U0546_RS19155 WP_000168305.1 3862683..3863219(-) (ssb) [Escherichia coli strain Nord8]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489