Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   HX0037_RS15820 Genome accession   NZ_CP139782
Coordinates   3219344..3220039 (+) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3214344..3225039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS15800 - 3215290..3216582 (+) 1293 WP_094247690.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  HX0037_RS15805 comC 3216722..3217474 (+) 753 WP_094247691.1 prepilin peptidase Machinery gene
  HX0037_RS15810 - 3217601..3218602 (+) 1002 WP_146277259.1 SPOR domain-containing protein -
  HX0037_RS15815 - 3218743..3219312 (+) 570 WP_070082167.1 Maf family protein -
  HX0037_RS15820 ysxA/radC 3219344..3220039 (+) 696 WP_007408165.1 RadC family protein Machinery gene
  HX0037_RS15825 mreB 3220131..3221144 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  HX0037_RS15830 mreC 3221175..3222038 (+) 864 WP_003152649.1 rod shape-determining protein MreC -
  HX0037_RS15835 mreD 3222035..3222553 (+) 519 WP_003152650.1 rod shape-determining protein MreD -
  HX0037_RS15840 minC 3222607..3223287 (+) 681 WP_003152653.1 septum site-determining protein MinC -
  HX0037_RS15845 minD 3223290..3224093 (+) 804 WP_003152655.1 septum site-determining protein MinD -
  HX0037_RS15850 - 3224221..3225024 (+) 804 WP_191073198.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=831438 HX0037_RS15820 WP_007408165.1 3219344..3220039(+) (ysxA/radC) [Bacillus amyloliquefaciens strain HX0037]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=831438 HX0037_RS15820 WP_007408165.1 3219344..3220039(+) (ysxA/radC) [Bacillus amyloliquefaciens strain HX0037]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCATAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429