Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   HX0037_RS09630 Genome accession   NZ_CP139782
Coordinates   2012382..2013578 (+) Length   398 a.a.
NCBI ID   WP_191073252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2007382..2018578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS09610 walK 2007477..2009312 (+) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  HX0037_RS09615 yycH 2009302..2010660 (+) 1359 WP_004393107.1 two-component system activity regulator YycH -
  HX0037_RS09620 - 2010647..2011486 (+) 840 WP_004393108.1 two-component system regulatory protein YycI -
  HX0037_RS09625 vicX 2011501..2012295 (+) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  HX0037_RS09630 htrA 2012382..2013578 (+) 1197 WP_191073252.1 S1C family serine protease Regulator
  HX0037_RS09635 - 2014087..2014299 (+) 213 WP_004393115.1 winged helix-turn-helix domain-containing protein -
  HX0037_RS09640 - 2014296..2015714 (+) 1419 WP_094247332.1 sensor histidine kinase -
  HX0037_RS09645 - 2015946..2016953 (+) 1008 WP_094247333.1 ThiF family adenylyltransferase -
  HX0037_RS09650 - 2016950..2018272 (+) 1323 WP_094247334.1 ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 42689.53 Da        Isoelectric Point: 8.9332

>NTDB_id=831400 HX0037_RS09630 WP_191073252.1 2012382..2013578(+) (htrA) [Bacillus amyloliquefaciens strain HX0037]
MDYNRDDEQYASEQPRRSKRGYFLSSLIGVIVGAALMAFLMPYWTGGDHGDSSKSTSRRLGSEQVKTVNVNVNDAVTNMV
SRVSDSVVGVLNIQKTDIWGEGGEAGSGSGVIYKKNGNTSYIVTNHHVIEGATEIEISLKDGSRVPAELIGSDRLMDLAV
LKVKSDKIKSAAQFGNSDQVKVGEPVIAIGNPLGLEFAGSVTQGIISGTERAVPVDSNGDGHPDWNAEVLQTDAAINPGN
SGGALMNISGKVVGINSMKIAESAVEGIGLSIPSKLVIPVIQDLEKYGEVRRPFLGIEMKSLTDIASYHWSQTLKLPKGV
KTGAVIMGVDAFSPAGKAGLKKLDVITGFDGHKVNDVVDLRERLYRKKIGDRVNITFYRSGKKKTSEVKLTEADRLQK

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=831400 HX0037_RS09630 WP_191073252.1 2012382..2013578(+) (htrA) [Bacillus amyloliquefaciens strain HX0037]
GTGGATTATAATCGCGATGATGAACAGTACGCCTCCGAACAGCCCCGCCGCAGCAAGAGAGGATACTTTCTATCAAGTCT
GATCGGCGTCATCGTCGGGGCCGCGCTCATGGCTTTCCTGATGCCGTACTGGACAGGCGGAGACCATGGAGACAGCAGCA
AAAGCACCAGCCGGCGTCTCGGCAGCGAACAGGTGAAAACAGTCAACGTAAATGTCAATGACGCTGTCACGAATATGGTC
AGCCGTGTATCGGATTCGGTAGTCGGCGTTCTCAATATCCAAAAGACTGATATTTGGGGAGAGGGCGGCGAAGCGGGAAG
CGGGTCGGGCGTCATTTACAAAAAGAACGGAAACACTTCTTATATCGTAACCAATCACCATGTCATTGAAGGTGCGACTG
AGATTGAGATCAGCCTGAAGGATGGTTCGCGCGTGCCTGCTGAGCTGATCGGGAGCGACCGTCTGATGGATCTCGCGGTA
CTGAAGGTGAAGTCTGATAAAATCAAATCGGCCGCCCAGTTCGGCAATTCTGATCAAGTCAAAGTCGGAGAACCGGTCAT
TGCGATCGGAAATCCGCTCGGACTTGAATTTGCGGGATCAGTGACACAGGGGATCATTTCAGGCACGGAAAGAGCGGTGC
CCGTTGACTCAAACGGCGACGGACATCCGGATTGGAATGCGGAAGTGCTGCAGACCGACGCCGCGATTAATCCCGGCAAC
AGCGGCGGCGCTTTGATGAATATATCGGGCAAGGTGGTCGGCATCAACTCAATGAAGATCGCTGAATCCGCCGTTGAAGG
AATCGGCCTGTCCATTCCGTCAAAGCTTGTCATTCCCGTTATTCAGGATTTAGAAAAATACGGAGAAGTCCGACGGCCTT
TCCTCGGTATTGAGATGAAATCCTTAACGGATATTGCGAGCTACCATTGGAGCCAGACGCTGAAACTCCCGAAAGGCGTT
AAAACCGGAGCGGTCATTATGGGTGTCGACGCGTTTTCACCGGCCGGAAAAGCGGGTTTGAAAAAGCTCGACGTGATCAC
CGGGTTCGACGGACATAAGGTCAATGACGTTGTGGATCTCCGCGAGCGCCTGTATCGCAAAAAGATCGGCGACCGTGTGA
ACATCACGTTCTACCGTTCGGGAAAGAAAAAAACATCGGAAGTCAAACTGACAGAAGCGGATCGATTACAGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

43.434

99.497

0.432

  htrA Streptococcus mitis NCTC 12261

41.451

96.985

0.402

  htrA Streptococcus gordonii str. Challis substr. CH1

40.409

98.241

0.397