Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   HX0037_RS09625 Genome accession   NZ_CP139782
Coordinates   2011501..2012295 (+) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2006501..2017295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS09605 walR 2006763..2007470 (+) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -
  HX0037_RS09610 walK 2007477..2009312 (+) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  HX0037_RS09615 yycH 2009302..2010660 (+) 1359 WP_004393107.1 two-component system activity regulator YycH -
  HX0037_RS09620 - 2010647..2011486 (+) 840 WP_004393108.1 two-component system regulatory protein YycI -
  HX0037_RS09625 vicX 2011501..2012295 (+) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  HX0037_RS09630 htrA 2012382..2013578 (+) 1197 WP_191073252.1 S1C family serine protease Regulator
  HX0037_RS09635 - 2014087..2014299 (+) 213 WP_004393115.1 winged helix-turn-helix domain-containing protein -
  HX0037_RS09640 - 2014296..2015714 (+) 1419 WP_094247332.1 sensor histidine kinase -
  HX0037_RS09645 - 2015946..2016953 (+) 1008 WP_094247333.1 ThiF family adenylyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=831399 HX0037_RS09625 WP_004393110.1 2011501..2012295(+) (vicX) [Bacillus amyloliquefaciens strain HX0037]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=831399 HX0037_RS09625 WP_004393110.1 2011501..2012295(+) (vicX) [Bacillus amyloliquefaciens strain HX0037]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCATTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTACCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTAAAATCTTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGATATGTGAGCGACAGAATGAAAGGCATCATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATTCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527