Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EMQ_RS13420 Genome accession   NZ_AP023410
Coordinates   2922537..2923097 (+) Length   186 a.a.
NCBI ID   WP_018307871.1    Uniprot ID   -
Organism   Acetobacter aceti NBRC 14818     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2917537..2928097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EMQ_RS13390 (EMQ_2678) - 2917913..2918167 (-) 255 WP_010667916.1 sulfurtransferase TusA family protein -
  EMQ_RS13395 (EMQ_2679) - 2918431..2918856 (+) 426 WP_231368039.1 transcriptional repressor -
  EMQ_RS13400 (EMQ_2680) - 2918853..2919701 (+) 849 WP_018307872.1 GNAT family N-acetyltransferase -
  EMQ_RS13405 (EMQ_2681) lnt 2919729..2921312 (+) 1584 WP_010667174.1 apolipoprotein N-acyltransferase -
  EMQ_RS13410 (EMQ_2682) - 2921394..2921879 (+) 486 WP_010667175.1 helix-turn-helix domain-containing protein -
  EMQ_RS13415 (EMQ_2683) - 2921929..2922255 (-) 327 WP_010667176.1 hypothetical protein -
  EMQ_RS13420 (EMQ_2684) ssb 2922537..2923097 (+) 561 WP_018307871.1 single-stranded DNA-binding protein Machinery gene
  EMQ_RS13425 (EMQ_2685) - 2923759..2925087 (+) 1329 WP_010668396.1 cytochrome c -
  EMQ_RS13430 (EMQ_2686) - 2925121..2925609 (+) 489 WP_018307870.1 (2Fe-2S)-binding protein -
  EMQ_RS13435 (EMQ_2687) - 2925602..2927929 (+) 2328 WP_018307869.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19402.21 Da        Isoelectric Point: 5.3881

>NTDB_id=83130 EMQ_RS13420 WP_018307871.1 2922537..2923097(+) (ssb) [Acetobacter aceti NBRC 14818]
MAGSVNKVILVGNLGRDPEIRTSQSGQKIASLSVATSDTWNDRASGERRERTEWHRVVVFNDRLADVAERFLRKGRKVYL
EGVLQTRKWTDQSGQEKYTTEVVLDRFRGELVLLDGRGSGEGEEGGGYGGGSEAGGFGGGGYGGGSGGGSRRIAGGGGAA
PRGSAPASPGGWDAPGGSDLDDEIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=83130 EMQ_RS13420 WP_018307871.1 2922537..2923097(+) (ssb) [Acetobacter aceti NBRC 14818]
ATGGCAGGCAGCGTGAACAAGGTCATTCTGGTTGGAAATCTCGGGCGTGACCCCGAAATCCGTACCAGCCAGAGCGGGCA
GAAGATCGCGTCGCTTTCGGTGGCCACGAGCGACACATGGAACGATCGTGCCTCCGGCGAGCGTCGTGAGCGTACGGAAT
GGCATCGTGTGGTCGTGTTCAATGACCGGCTGGCGGACGTCGCGGAGCGGTTTCTGAGAAAGGGACGGAAGGTCTATCTC
GAAGGCGTTCTGCAGACCCGTAAATGGACCGACCAGTCCGGACAGGAAAAATATACGACCGAAGTCGTGCTGGACCGGTT
TCGTGGTGAACTGGTGCTTCTGGATGGTCGCGGCTCCGGCGAGGGCGAAGAGGGCGGTGGCTACGGCGGCGGCTCCGAGG
CAGGCGGCTTCGGTGGTGGCGGTTATGGCGGCGGCTCAGGCGGTGGTTCCCGCCGGATTGCAGGCGGTGGCGGTGCGGCT
CCGCGTGGCAGTGCTCCGGCTTCCCCCGGCGGCTGGGATGCTCCGGGCGGCAGCGATCTGGACGACGAAATTCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.733

100

0.5
  ssb Vibrio cholerae strain A1552

43.169

98.387

0.425
  ssb Neisseria meningitidis MC58

40.526

100

0.414
  ssb Neisseria gonorrhoeae MS11

40.426

100

0.409

Multiple sequence alignment