Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QKW62_RS19780 | Genome accession | NZ_CP125310 |
| Coordinates | 3958810..3959352 (-) | Length | 180 a.a. |
| NCBI ID | WP_021314431.1 | Uniprot ID | A0AAW9PN67 |
| Organism | Citrobacter freundii strain CF5125 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3938330..3976732 | 3958810..3959352 | within | 0 |
Gene organization within MGE regions
Location: 3938330..3976732
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QKW62_RS19640 (QKW62_19635) | - | 3938330..3939040 (+) | 711 | WP_059514180.1 | tyrosine-type recombinase/integrase | - |
| QKW62_RS19645 (QKW62_19640) | - | 3939197..3939451 (+) | 255 | WP_000104338.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| QKW62_RS19650 (QKW62_19645) | - | 3939441..3939731 (+) | 291 | WP_000143805.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| QKW62_RS19655 (QKW62_19650) | - | 3940187..3940510 (+) | 324 | WP_094935762.1 | hypothetical protein | - |
| QKW62_RS19660 (QKW62_19655) | - | 3940507..3941115 (+) | 609 | WP_094935763.1 | DUF2726 domain-containing protein | - |
| QKW62_RS19665 (QKW62_19660) | - | 3941337..3941879 (+) | 543 | WP_094935764.1 | hypothetical protein | - |
| QKW62_RS19670 (QKW62_19665) | - | 3941876..3942184 (+) | 309 | WP_071667453.1 | hypothetical protein | - |
| QKW62_RS19675 (QKW62_19670) | - | 3942282..3942518 (+) | 237 | WP_224019239.1 | hypothetical protein | - |
| QKW62_RS19680 (QKW62_19675) | - | 3942530..3943084 (+) | 555 | WP_059509465.1 | phospholipase D family protein | - |
| QKW62_RS19685 (QKW62_19680) | repA | 3943237..3943485 (+) | 249 | WP_058670686.1 | replication regulatory protein RepA | - |
| QKW62_RS28185 | - | 3943537..3943659 (-) | 123 | Protein_3851 | replication protein RepA | - |
| QKW62_RS19690 (QKW62_19685) | tap | 3943730..3943807 (+) | 78 | WP_011201829.1 | RepA leader peptide Tap | - |
| QKW62_RS19695 (QKW62_19690) | repA | 3943788..3944663 (+) | 876 | WP_094935765.1 | incFII family plasmid replication initiator RepA | - |
| QKW62_RS19700 (QKW62_19695) | - | 3945766..3946488 (+) | 723 | WP_025760202.1 | NYN domain-containing protein | - |
| QKW62_RS19705 (QKW62_19700) | - | 3946508..3947107 (+) | 600 | WP_025760201.1 | DUF2913 family protein | - |
| QKW62_RS19710 (QKW62_19705) | - | 3947379..3948641 (+) | 1263 | WP_000608644.1 | IS1380-like element ISEcp1 family transposase | - |
| QKW62_RS19715 (QKW62_19710) | - | 3948890..3949765 (+) | 876 | WP_100663667.1 | extended-spectrum class A beta-lactamase KLUC-5 | - |
| QKW62_RS19720 (QKW62_19715) | - | 3949812..3950105 (-) | 294 | WP_100663666.1 | WbuC family cupin fold metalloprotein | - |
| QKW62_RS19725 (QKW62_19720) | - | 3950242..3950487 (+) | 246 | Protein_3859 | transposase | - |
| QKW62_RS19730 (QKW62_19725) | - | 3950500..3951651 (-) | 1152 | WP_001254932.1 | IS30-like element IS30 family transposase | - |
| QKW62_RS19735 (QKW62_19730) | - | 3951719..3952612 (+) | 894 | Protein_3861 | IS3 family transposase | - |
| QKW62_RS19740 (QKW62_19735) | - | 3952628..3952801 (+) | 174 | Protein_3862 | IS481 family transposase | - |
| QKW62_RS19750 (QKW62_19745) | - | 3954432..3954806 (-) | 375 | WP_001568060.1 | hypothetical protein | - |
| QKW62_RS19755 (QKW62_19750) | - | 3954862..3955188 (-) | 327 | WP_001568059.1 | hypothetical protein | - |
| QKW62_RS19760 (QKW62_19755) | - | 3955185..3955913 (-) | 729 | WP_001568058.1 | plasmid SOS inhibition protein A | - |
| QKW62_RS19765 (QKW62_19760) | psiB | 3955910..3956341 (-) | 432 | WP_001568057.1 | conjugation system SOS inhibitor PsiB | - |
| QKW62_RS19770 (QKW62_19765) | - | 3956386..3958443 (-) | 2058 | WP_047066591.1 | ParB/RepB/Spo0J family partition protein | - |
| QKW62_RS19775 (QKW62_19770) | - | 3958513..3958761 (-) | 249 | WP_001568055.1 | DUF905 domain-containing protein | - |
| QKW62_RS19780 (QKW62_19775) | ssb | 3958810..3959352 (-) | 543 | WP_021314431.1 | single-stranded DNA-binding protein | Machinery gene |
| QKW62_RS19785 (QKW62_19780) | - | 3960181..3960744 (-) | 564 | WP_004152756.1 | methyltransferase | - |
| QKW62_RS19790 (QKW62_19785) | - | 3960792..3962147 (-) | 1356 | WP_013054814.1 | DUF3560 domain-containing protein | - |
| QKW62_RS19795 (QKW62_19790) | - | 3962199..3962429 (-) | 231 | WP_001568051.1 | hypothetical protein | - |
| QKW62_RS19800 (QKW62_19795) | - | 3962521..3962748 (-) | 228 | WP_001568050.1 | hypothetical protein | - |
| QKW62_RS19805 (QKW62_19800) | - | 3963428..3963748 (-) | 321 | WP_001568049.1 | hypothetical protein | - |
| QKW62_RS19810 (QKW62_19805) | - | 3963783..3964037 (-) | 255 | WP_049139361.1 | DNA polymerase III subunit theta | - |
| QKW62_RS19815 (QKW62_19810) | - | 3964222..3964413 (-) | 192 | WP_001568047.1 | hypothetical protein | - |
| QKW62_RS19820 (QKW62_19815) | - | 3964456..3964962 (-) | 507 | WP_055316506.1 | antirestriction protein ArdA | - |
| QKW62_RS19825 (QKW62_19820) | - | 3965005..3965433 (-) | 429 | WP_001568045.1 | antirestriction protein | - |
| QKW62_RS19830 (QKW62_19825) | - | 3966114..3966881 (-) | 768 | WP_001568044.1 | hypothetical protein | - |
| QKW62_RS19835 (QKW62_19830) | - | 3966935..3967354 (-) | 420 | WP_001568043.1 | DUF1380 domain-containing protein | - |
| QKW62_RS19840 (QKW62_19835) | - | 3967364..3967585 (-) | 222 | WP_001568042.1 | hypothetical protein | - |
| QKW62_RS19845 (QKW62_19840) | - | 3967585..3968286 (-) | 702 | WP_001568041.1 | DNA methylase | - |
| QKW62_RS19850 (QKW62_19845) | - | 3968358..3968527 (-) | 170 | Protein_3884 | hypothetical protein | - |
| QKW62_RS19855 (QKW62_19850) | - | 3968723..3968953 (-) | 231 | WP_001568040.1 | hypothetical protein | - |
| QKW62_RS19860 (QKW62_19855) | - | 3969016..3969687 (-) | 672 | WP_001568039.1 | plasmid partitioning/stability family protein | - |
| QKW62_RS19865 (QKW62_19860) | parM | 3969690..3970661 (-) | 972 | WP_001568038.1 | plasmid segregation protein ParM domain-containing protein | - |
| QKW62_RS19870 (QKW62_19865) | umuD | 3970895..3971326 (+) | 432 | WP_001568036.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| QKW62_RS19875 (QKW62_19870) | - | 3971326..3972597 (+) | 1272 | WP_004197646.1 | Y-family DNA polymerase | - |
| QKW62_RS19880 (QKW62_19875) | - | 3973009..3973884 (+) | 876 | WP_004098982.1 | RepB family plasmid replication initiator protein | - |
| QKW62_RS19885 (QKW62_19880) | - | 3974541..3975167 (+) | 627 | WP_004197649.1 | ParA family plasmid-partitioning AAA ATPase | - |
| QKW62_RS19890 (QKW62_19885) | - | 3975164..3975466 (+) | 303 | WP_071571079.1 | hypothetical protein | - |
| QKW62_RS19895 (QKW62_19890) | - | 3975938..3976732 (-) | 795 | WP_004197635.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19513.95 Da Isoelectric Point: 7.2058
>NTDB_id=831049 QKW62_RS19780 WP_021314431.1 3958810..3959352(-) (ssb) [Citrobacter freundii strain CF5125]
MAARGVNKVILVGHLGQDPEVRYMPNGGAVVNLTLATSETWRDKQTGEMRENTEWHRVVMFGKLAEVAGEYLRKGAQVFI
EGQLRTRNWQDDAGVTRYVTEVLVGQNGTLQMLGGRRESGVPESAAQPQNPATPAQPAQAAAKSPKAKGGKKGRQDAAPS
QQPPQPLPDDFPPMDDEAPF
MAARGVNKVILVGHLGQDPEVRYMPNGGAVVNLTLATSETWRDKQTGEMRENTEWHRVVMFGKLAEVAGEYLRKGAQVFI
EGQLRTRNWQDDAGVTRYVTEVLVGQNGTLQMLGGRRESGVPESAAQPQNPATPAQPAQAAAKSPKAKGGKKGRQDAAPS
QQPPQPLPDDFPPMDDEAPF
Nucleotide
Download Length: 543 bp
>NTDB_id=831049 QKW62_RS19780 WP_021314431.1 3958810..3959352(-) (ssb) [Citrobacter freundii strain CF5125]
ATGGCAGCACGTGGCGTTAACAAAGTCATTCTGGTTGGACATCTGGGACAGGACCCGGAAGTGCGTTACATGCCCAACGG
GGGCGCAGTGGTCAATCTGACGCTGGCCACGTCTGAAACATGGCGTGACAAGCAGACGGGAGAGATGCGCGAAAACACCG
AGTGGCACCGTGTTGTCATGTTCGGCAAGCTCGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCGCACAGGTCTTCATC
GAGGGCCAGCTGCGCACCCGCAACTGGCAGGACGATGCCGGAGTCACGCGCTACGTCACCGAGGTGCTGGTCGGGCAGAA
CGGCACCCTGCAGATGCTCGGCGGCCGCCGTGAATCCGGAGTGCCTGAGAGCGCCGCGCAGCCGCAGAATCCTGCCACCC
CGGCACAACCTGCTCAGGCCGCAGCTAAATCCCCGAAAGCGAAGGGCGGTAAGAAAGGCCGTCAGGATGCCGCCCCGTCT
CAGCAACCGCCTCAGCCACTCCCGGATGATTTCCCACCAATGGATGATGAAGCGCCCTTTTAA
ATGGCAGCACGTGGCGTTAACAAAGTCATTCTGGTTGGACATCTGGGACAGGACCCGGAAGTGCGTTACATGCCCAACGG
GGGCGCAGTGGTCAATCTGACGCTGGCCACGTCTGAAACATGGCGTGACAAGCAGACGGGAGAGATGCGCGAAAACACCG
AGTGGCACCGTGTTGTCATGTTCGGCAAGCTCGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCGCACAGGTCTTCATC
GAGGGCCAGCTGCGCACCCGCAACTGGCAGGACGATGCCGGAGTCACGCGCTACGTCACCGAGGTGCTGGTCGGGCAGAA
CGGCACCCTGCAGATGCTCGGCGGCCGCCGTGAATCCGGAGTGCCTGAGAGCGCCGCGCAGCCGCAGAATCCTGCCACCC
CGGCACAACCTGCTCAGGCCGCAGCTAAATCCCCGAAAGCGAAGGGCGGTAAGAAAGGCCGTCAGGATGCCGCCCCGTCT
CAGCAACCGCCTCAGCCACTCCCGGATGATTTCCCACCAATGGATGATGAAGCGCCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.949 |
100 |
0.628 |
| ssb | Glaesserella parasuis strain SC1401 |
46.809 |
100 |
0.489 |
| ssb | Neisseria meningitidis MC58 |
41.808 |
98.333 |
0.411 |
| ssb | Neisseria gonorrhoeae MS11 |
41.808 |
98.333 |
0.411 |