Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QKW62_RS19425 Genome accession   NZ_CP125310
Coordinates   3900260..3900802 (-) Length   180 a.a.
NCBI ID   WP_021314431.1    Uniprot ID   A0AAW9PN67
Organism   Citrobacter freundii strain CF5125     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3879339..3918174 3900260..3900802 within 0


Gene organization within MGE regions


Location: 3879339..3918174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKW62_RS19325 (QKW62_19320) purL 3879339..3883226 (-) 3888 WP_054528656.1 phosphoribosylformylglycinamidine synthase -
  QKW62_RS19330 (QKW62_19325) mltF 3883483..3885033 (+) 1551 WP_003838390.1 membrane-bound lytic murein transglycosylase MltF -
  QKW62_RS19335 (QKW62_19330) tadA 3885046..3885510 (-) 465 WP_229235875.1 tRNA adenosine(34) deaminase TadA -
  QKW62_RS19340 (QKW62_19335) yfhb 3885600..3886235 (-) 636 WP_003037603.1 phosphatidylglycerophosphatase C -
  QKW62_RS19345 (QKW62_19340) - 3886239..3887603 (-) 1365 WP_054528657.1 PTS transporter subunit EIIC -
  QKW62_RS19350 (QKW62_19345) murQ 3887613..3888506 (-) 894 WP_032937935.1 N-acetylmuramic acid 6-phosphate etherase -
  QKW62_RS19355 (QKW62_19350) - 3888829..3890091 (+) 1263 WP_000608644.1 IS1380-like element ISEcp1 family transposase -
  QKW62_RS19360 (QKW62_19355) - 3890340..3891215 (+) 876 WP_100663667.1 extended-spectrum class A beta-lactamase KLUC-5 -
  QKW62_RS19365 (QKW62_19360) - 3891262..3891555 (-) 294 WP_100663666.1 WbuC family cupin fold metalloprotein -
  QKW62_RS19370 (QKW62_19365) - 3891692..3891937 (+) 246 Protein_3787 transposase -
  QKW62_RS19375 (QKW62_19370) - 3891950..3893101 (-) 1152 WP_001254932.1 IS30-like element IS30 family transposase -
  QKW62_RS19380 (QKW62_19375) - 3893169..3894062 (+) 894 Protein_3789 IS3 family transposase -
  QKW62_RS19385 (QKW62_19380) - 3894078..3894251 (+) 174 Protein_3790 IS481 family transposase -
  QKW62_RS19395 (QKW62_19390) - 3895882..3896256 (-) 375 WP_001568060.1 hypothetical protein -
  QKW62_RS19400 (QKW62_19395) - 3896312..3896638 (-) 327 WP_001568059.1 hypothetical protein -
  QKW62_RS19405 (QKW62_19400) - 3896635..3897363 (-) 729 WP_001568058.1 plasmid SOS inhibition protein A -
  QKW62_RS19410 (QKW62_19405) psiB 3897360..3897791 (-) 432 WP_001568057.1 conjugation system SOS inhibitor PsiB -
  QKW62_RS19415 (QKW62_19410) - 3897836..3899893 (-) 2058 WP_047066591.1 ParB/RepB/Spo0J family partition protein -
  QKW62_RS19420 (QKW62_19415) - 3899963..3900211 (-) 249 WP_001568055.1 DUF905 domain-containing protein -
  QKW62_RS19425 (QKW62_19420) ssb 3900260..3900802 (-) 543 WP_021314431.1 single-stranded DNA-binding protein Machinery gene
  QKW62_RS19430 (QKW62_19425) - 3901631..3902194 (-) 564 WP_004152756.1 methyltransferase -
  QKW62_RS19435 (QKW62_19430) - 3902242..3903597 (-) 1356 WP_013054814.1 DUF3560 domain-containing protein -
  QKW62_RS19440 (QKW62_19435) - 3903649..3903879 (-) 231 WP_001568051.1 hypothetical protein -
  QKW62_RS19445 (QKW62_19440) - 3903971..3904198 (-) 228 WP_001568050.1 hypothetical protein -
  QKW62_RS19450 (QKW62_19445) - 3904878..3905198 (-) 321 WP_001568049.1 hypothetical protein -
  QKW62_RS19455 (QKW62_19450) - 3905233..3905487 (-) 255 WP_049139361.1 DNA polymerase III subunit theta -
  QKW62_RS19460 (QKW62_19455) - 3905672..3905863 (-) 192 WP_001568047.1 hypothetical protein -
  QKW62_RS19465 (QKW62_19460) - 3905906..3906412 (-) 507 WP_055316506.1 antirestriction protein ArdA -
  QKW62_RS19470 (QKW62_19465) - 3906455..3906883 (-) 429 WP_001568045.1 antirestriction protein -
  QKW62_RS19475 (QKW62_19470) - 3907564..3908331 (-) 768 WP_001568044.1 hypothetical protein -
  QKW62_RS19480 (QKW62_19475) - 3908385..3908804 (-) 420 WP_001568043.1 DUF1380 domain-containing protein -
  QKW62_RS19485 (QKW62_19480) - 3908814..3909035 (-) 222 WP_001568042.1 hypothetical protein -
  QKW62_RS19490 (QKW62_19485) - 3909035..3909736 (-) 702 WP_001568041.1 DNA methylase -
  QKW62_RS19495 (QKW62_19490) - 3909808..3909977 (-) 170 Protein_3812 hypothetical protein -
  QKW62_RS19500 (QKW62_19495) - 3910173..3910403 (-) 231 WP_001568040.1 hypothetical protein -
  QKW62_RS19505 (QKW62_19500) - 3910466..3911137 (-) 672 WP_001568039.1 plasmid partitioning/stability family protein -
  QKW62_RS19510 (QKW62_19505) parM 3911140..3912111 (-) 972 WP_001568038.1 plasmid segregation protein ParM domain-containing protein -
  QKW62_RS19515 (QKW62_19510) umuD 3912345..3912776 (+) 432 WP_001568036.1 translesion error-prone DNA polymerase V autoproteolytic subunit -
  QKW62_RS19520 (QKW62_19515) - 3912776..3914047 (+) 1272 WP_004197646.1 Y-family DNA polymerase -
  QKW62_RS19525 (QKW62_19520) - 3914459..3915334 (+) 876 WP_004098982.1 RepB family plasmid replication initiator protein -
  QKW62_RS19530 (QKW62_19525) - 3915999..3916625 (+) 627 WP_004197649.1 ParA family plasmid-partitioning AAA ATPase -
  QKW62_RS19535 (QKW62_19530) - 3916622..3916924 (+) 303 WP_071571079.1 hypothetical protein -
  QKW62_RS19540 (QKW62_19535) - 3917380..3918174 (-) 795 WP_004197635.1 site-specific integrase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19513.95 Da        Isoelectric Point: 7.2058

>NTDB_id=831048 QKW62_RS19425 WP_021314431.1 3900260..3900802(-) (ssb) [Citrobacter freundii strain CF5125]
MAARGVNKVILVGHLGQDPEVRYMPNGGAVVNLTLATSETWRDKQTGEMRENTEWHRVVMFGKLAEVAGEYLRKGAQVFI
EGQLRTRNWQDDAGVTRYVTEVLVGQNGTLQMLGGRRESGVPESAAQPQNPATPAQPAQAAAKSPKAKGGKKGRQDAAPS
QQPPQPLPDDFPPMDDEAPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=831048 QKW62_RS19425 WP_021314431.1 3900260..3900802(-) (ssb) [Citrobacter freundii strain CF5125]
ATGGCAGCACGTGGCGTTAACAAAGTCATTCTGGTTGGACATCTGGGACAGGACCCGGAAGTGCGTTACATGCCCAACGG
GGGCGCAGTGGTCAATCTGACGCTGGCCACGTCTGAAACATGGCGTGACAAGCAGACGGGAGAGATGCGCGAAAACACCG
AGTGGCACCGTGTTGTCATGTTCGGCAAGCTCGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCGCACAGGTCTTCATC
GAGGGCCAGCTGCGCACCCGCAACTGGCAGGACGATGCCGGAGTCACGCGCTACGTCACCGAGGTGCTGGTCGGGCAGAA
CGGCACCCTGCAGATGCTCGGCGGCCGCCGTGAATCCGGAGTGCCTGAGAGCGCCGCGCAGCCGCAGAATCCTGCCACCC
CGGCACAACCTGCTCAGGCCGCAGCTAAATCCCCGAAAGCGAAGGGCGGTAAGAAAGGCCGTCAGGATGCCGCCCCGTCT
CAGCAACCGCCTCAGCCACTCCCGGATGATTTCCCACCAATGGATGATGAAGCGCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.949

100

0.628
  ssb Glaesserella parasuis strain SC1401

46.809

100

0.489
  ssb Neisseria meningitidis MC58

41.808

98.333

0.411
  ssb Neisseria gonorrhoeae MS11

41.808

98.333

0.411