Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QKW62_RS05230 Genome accession   NZ_CP125310
Coordinates   1097609..1098151 (+) Length   180 a.a.
NCBI ID   WP_021314431.1    Uniprot ID   A0AAW9PN67
Organism   Citrobacter freundii strain CF5125     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1084365..1106719 1097609..1098151 within 0


Gene organization within MGE regions


Location: 1084365..1106719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKW62_RS05135 (QKW62_05130) - 1084365..1085636 (-) 1272 WP_004197646.1 Y-family DNA polymerase -
  QKW62_RS05140 (QKW62_05135) umuD 1085636..1086067 (-) 432 WP_001568036.1 translesion error-prone DNA polymerase V autoproteolytic subunit -
  QKW62_RS05145 (QKW62_05140) parM 1086301..1087272 (+) 972 WP_001568038.1 plasmid segregation protein ParM domain-containing protein -
  QKW62_RS05150 (QKW62_05145) - 1087275..1087946 (+) 672 WP_001568039.1 plasmid partitioning/stability family protein -
  QKW62_RS05155 (QKW62_05150) - 1088009..1088239 (+) 231 WP_001568040.1 hypothetical protein -
  QKW62_RS05160 (QKW62_05155) - 1088435..1088604 (+) 170 Protein_993 hypothetical protein -
  QKW62_RS05165 (QKW62_05160) - 1088676..1089377 (+) 702 WP_001568041.1 DNA methylase -
  QKW62_RS05170 (QKW62_05165) - 1089377..1089598 (+) 222 WP_001568042.1 hypothetical protein -
  QKW62_RS05175 (QKW62_05170) - 1089608..1090027 (+) 420 WP_001568043.1 DUF1380 domain-containing protein -
  QKW62_RS05180 (QKW62_05175) - 1090081..1090848 (+) 768 WP_001568044.1 hypothetical protein -
  QKW62_RS05185 (QKW62_05180) - 1091529..1091957 (+) 429 WP_001568045.1 antirestriction protein -
  QKW62_RS05190 (QKW62_05185) - 1092000..1092506 (+) 507 WP_055316506.1 antirestriction protein ArdA -
  QKW62_RS05195 (QKW62_05190) - 1092549..1092740 (+) 192 WP_001568047.1 hypothetical protein -
  QKW62_RS05200 (QKW62_05195) - 1092925..1093179 (+) 255 WP_049139361.1 DNA polymerase III subunit theta -
  QKW62_RS05205 (QKW62_05200) - 1093214..1093534 (+) 321 WP_001568049.1 hypothetical protein -
  QKW62_RS05210 (QKW62_05205) - 1094214..1094441 (+) 228 WP_001568050.1 hypothetical protein -
  QKW62_RS05215 (QKW62_05210) - 1094549..1094762 (+) 214 Protein_1004 hypothetical protein -
  QKW62_RS05220 (QKW62_05215) - 1094814..1096169 (+) 1356 WP_013054814.1 DUF3560 domain-containing protein -
  QKW62_RS05225 (QKW62_05220) - 1096217..1096780 (+) 564 WP_004152756.1 methyltransferase -
  QKW62_RS05230 (QKW62_05225) ssb 1097609..1098151 (+) 543 WP_021314431.1 single-stranded DNA-binding protein Machinery gene
  QKW62_RS05235 (QKW62_05230) - 1098200..1098448 (+) 249 WP_001568055.1 DUF905 domain-containing protein -
  QKW62_RS05240 (QKW62_05235) - 1098518..1100575 (+) 2058 WP_047066591.1 ParB/RepB/Spo0J family partition protein -
  QKW62_RS05245 (QKW62_05240) psiB 1100620..1101051 (+) 432 WP_001568057.1 conjugation system SOS inhibitor PsiB -
  QKW62_RS05250 (QKW62_05245) - 1101048..1101776 (+) 729 WP_001568058.1 plasmid SOS inhibition protein A -
  QKW62_RS05255 (QKW62_05250) - 1101773..1102099 (+) 327 WP_001568059.1 hypothetical protein -
  QKW62_RS05260 (QKW62_05255) - 1102155..1102529 (+) 375 WP_001568060.1 hypothetical protein -
  QKW62_RS05265 (QKW62_05260) - 1102733..1104102 (+) 1370 WP_085949440.1 IS3-like element ISKpn8 family transposase -
  QKW62_RS05270 (QKW62_05265) - 1104160..1104333 (-) 174 Protein_1015 IS481 family transposase -
  QKW62_RS05275 (QKW62_05270) - 1104349..1105242 (-) 894 Protein_1016 IS3 family transposase -
  QKW62_RS05280 (QKW62_05275) - 1105310..1106461 (+) 1152 WP_001254932.1 IS30-like element IS30 family transposase -
  QKW62_RS05285 (QKW62_05280) - 1106474..1106719 (-) 246 Protein_1018 transposase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19513.95 Da        Isoelectric Point: 7.2058

>NTDB_id=831039 QKW62_RS05230 WP_021314431.1 1097609..1098151(+) (ssb) [Citrobacter freundii strain CF5125]
MAARGVNKVILVGHLGQDPEVRYMPNGGAVVNLTLATSETWRDKQTGEMRENTEWHRVVMFGKLAEVAGEYLRKGAQVFI
EGQLRTRNWQDDAGVTRYVTEVLVGQNGTLQMLGGRRESGVPESAAQPQNPATPAQPAQAAAKSPKAKGGKKGRQDAAPS
QQPPQPLPDDFPPMDDEAPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=831039 QKW62_RS05230 WP_021314431.1 1097609..1098151(+) (ssb) [Citrobacter freundii strain CF5125]
ATGGCAGCACGTGGCGTTAACAAAGTCATTCTGGTTGGACATCTGGGACAGGACCCGGAAGTGCGTTACATGCCCAACGG
GGGCGCAGTGGTCAATCTGACGCTGGCCACGTCTGAAACATGGCGTGACAAGCAGACGGGAGAGATGCGCGAAAACACCG
AGTGGCACCGTGTTGTCATGTTCGGCAAGCTCGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCGCACAGGTCTTCATC
GAGGGCCAGCTGCGCACCCGCAACTGGCAGGACGATGCCGGAGTCACGCGCTACGTCACCGAGGTGCTGGTCGGGCAGAA
CGGCACCCTGCAGATGCTCGGCGGCCGCCGTGAATCCGGAGTGCCTGAGAGCGCCGCGCAGCCGCAGAATCCTGCCACCC
CGGCACAACCTGCTCAGGCCGCAGCTAAATCCCCGAAAGCGAAGGGCGGTAAGAAAGGCCGTCAGGATGCCGCCCCGTCT
CAGCAACCGCCTCAGCCACTCCCGGATGATTTCCCACCAATGGATGATGAAGCGCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.949

100

0.628
  ssb Glaesserella parasuis strain SC1401

46.809

100

0.489
  ssb Neisseria meningitidis MC58

41.808

98.333

0.411
  ssb Neisseria gonorrhoeae MS11

41.808

98.333

0.411