Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMB36_RS20955 Genome accession   NZ_CP125300
Coordinates   4931504..4932058 (-) Length   184 a.a.
NCBI ID   WP_024638200.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. syringae strain B48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4926504..4937058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMB36_RS20930 (QMB36_20925) - 4926756..4927649 (+) 894 WP_054091767.1 ABC transporter permease subunit -
  QMB36_RS20935 (QMB36_20930) ugpC 4927646..4928752 (+) 1107 WP_024642448.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  QMB36_RS20940 (QMB36_20935) - 4928759..4929520 (+) 762 WP_024642449.1 glycerophosphoryl diester phosphodiesterase -
  QMB36_RS20945 (QMB36_20940) - 4929517..4930260 (+) 744 WP_054091768.1 inositol monophosphatase family protein -
  QMB36_RS20950 (QMB36_20945) - 4930260..4931372 (+) 1113 WP_024642450.1 endo-1,4-beta-xylanase -
  QMB36_RS20955 (QMB36_20950) ssb 4931504..4932058 (-) 555 WP_024638200.1 single-stranded DNA-binding protein Machinery gene
  QMB36_RS20960 (QMB36_20955) - 4932068..4933462 (-) 1395 WP_003400420.1 MFS transporter -
  QMB36_RS20965 (QMB36_20960) uvrA 4933592..4936426 (+) 2835 WP_054091769.1 excinuclease ABC subunit UvrA -
  QMB36_RS20970 (QMB36_20965) bfr 4936521..4936985 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20492.60 Da        Isoelectric Point: 5.9539

>NTDB_id=831028 QMB36_RS20955 WP_024638200.1 4931504..4932058(-) (ssb) [Pseudomonas syringae pv. syringae strain B48]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGEKKEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQNYNQQPPQQRDS
RPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=831028 QMB36_RS20955 WP_024638200.1 4931504..4932058(-) (ssb) [Pseudomonas syringae pv. syringae strain B48]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAGAGCGGCGAGAAAAAAGAAAAAACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAACGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGCGGTGGCAACTACAACCAGTCCGCGC
CTCGTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAGAACTACAATCAGCAGCCGCCACAACAGCGCGACTCG
CGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.216

100

0.565
  ssb Glaesserella parasuis strain SC1401

49.189

100

0.495
  ssb Neisseria meningitidis MC58

44.262

99.457

0.44
  ssb Neisseria gonorrhoeae MS11

44.262

99.457

0.44