Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QL281_RS12080 Genome accession   NZ_CP125292
Coordinates   2245155..2245673 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM117797     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2240155..2250673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS12050 (QL281_12050) yyaJ 2240661..2242016 (+) 1356 WP_014481501.1 MFS transporter -
  QL281_RS12055 (QL281_12055) maa 2242050..2242604 (-) 555 WP_041336710.1 sugar O-acetyltransferase -
  QL281_RS12060 (QL281_12060) yyaH 2242620..2243000 (-) 381 WP_015250784.1 VOC family protein -
  QL281_RS12065 (QL281_12065) ccpB 2243056..2243991 (-) 936 WP_017695815.1 transcriptional regulator CcpB -
  QL281_RS12070 (QL281_12070) xth 2244051..2244809 (-) 759 WP_041336712.1 exodeoxyribonuclease III -
  QL281_RS12075 (QL281_12075) rpsR 2244872..2245111 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  QL281_RS12080 (QL281_12080) ssbA 2245155..2245673 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  QL281_RS12085 (QL281_12085) rpsF 2245714..2246001 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  QL281_RS12090 (QL281_12090) ychF 2246112..2247212 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  QL281_RS12095 (QL281_12095) yyaE 2247339..2249342 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  QL281_RS12100 (QL281_12100) yyzM 2249393..2249599 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=830909 QL281_RS12080 WP_003219228.1 2245155..2245673(-) (ssbA) [Bacillus subtilis strain SRCM117797]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=830909 QL281_RS12080 WP_003219228.1 2245155..2245673(-) (ssbA) [Bacillus subtilis strain SRCM117797]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378