Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QLX50_RS18990 Genome accession   NZ_CP125283
Coordinates   3841300..3841818 (-) Length   172 a.a.
NCBI ID   WP_007615071.1    Uniprot ID   -
Organism   Bacillus velezensis strain IFST-221     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3836300..3846818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX50_RS18960 (QLX50_18960) - 3837500..3837880 (-) 381 WP_044802270.1 VOC family protein -
  QLX50_RS18965 (QLX50_18965) - 3837937..3838875 (-) 939 WP_044802269.1 LacI family DNA-binding transcriptional regulator -
  QLX50_RS18970 (QLX50_18970) xth 3838938..3839696 (-) 759 WP_044802268.1 exodeoxyribonuclease III -
  QLX50_RS18975 (QLX50_18975) - 3839693..3840250 (-) 558 WP_044802267.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QLX50_RS18980 (QLX50_18980) - 3840247..3840828 (-) 582 WP_044802266.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  QLX50_RS18985 (QLX50_18985) rpsR 3841017..3841256 (-) 240 WP_029325793.1 30S ribosomal protein S18 -
  QLX50_RS18990 (QLX50_18990) ssbA 3841300..3841818 (-) 519 WP_007615071.1 single-stranded DNA-binding protein SsbA Machinery gene
  QLX50_RS18995 (QLX50_18995) rpsF 3841858..3842145 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  QLX50_RS19000 (QLX50_19000) ychF 3842257..3843357 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  QLX50_RS19005 (QLX50_19005) - 3843484..3845487 (-) 2004 WP_044802265.1 molybdopterin-dependent oxidoreductase -
  QLX50_RS19010 (QLX50_19010) - 3845534..3845740 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18772.33 Da        Isoelectric Point: 4.7621

>NTDB_id=830650 QLX50_RS18990 WP_007615071.1 3841300..3841818(-) (ssbA) [Bacillus velezensis strain IFST-221]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNNGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=830650 QLX50_RS18990 WP_007615071.1 3841300..3841818(-) (ssbA) [Bacillus velezensis strain IFST-221]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAACGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372