Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R8623_RS05375 Genome accession   NZ_AP026928
Coordinates   1066622..1067692 (+) Length   356 a.a.
NCBI ID   WP_000817886.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700406     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1061622..1072692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8623_RS05355 - 1062678..1062863 (-) 186 WP_001844782.1 hypothetical protein -
  R8623_RS05360 (PC0401_10470) ylqF 1062945..1063796 (+) 852 WP_000201315.1 ribosome biogenesis GTPase YlqF -
  R8623_RS05365 (PC0401_10480) - 1063783..1064562 (+) 780 WP_000201135.1 ribonuclease HII -
  R8623_RS05370 (PC0401_10490) - 1064578..1066128 (+) 1551 WP_024477890.1 ClC family H(+)/Cl(-) exchange transporter -
  R8623_RS05375 (PC0401_10500) xerS 1066622..1067692 (+) 1071 WP_000817886.1 tyrosine recombinase XerS Machinery gene
  R8623_RS05380 (PC0401_10510) - 1067765..1068754 (-) 990 WP_000873993.1 lipoate--protein ligase -
  R8623_RS05385 (PC0401_10520) lpdA 1068818..1070521 (-) 1704 WP_001162695.1 dihydrolipoyl dehydrogenase -
  R8623_RS05390 (PC0401_10530) - 1070567..1071610 (-) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41143.24 Da        Isoelectric Point: 9.7561

>NTDB_id=83044 R8623_RS05375 WP_000817886.1 1066622..1067692(+) (xerS) [Streptococcus pneumoniae strain PZ900700406]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAKNIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=83044 R8623_RS05375 WP_000817886.1 1066622..1067692(+) (xerS) [Streptococcus pneumoniae strain PZ900700406]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAAGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTAAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.438

100

0.994

Multiple sequence alignment