Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R8623_RS05565 Genome accession   NZ_AP026928
Coordinates   1103905..1105572 (-) Length   555 a.a.
NCBI ID   WP_016398284.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700406     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1098905..1110572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8623_RS05540 (PC0401_10820) - 1100057..1100347 (-) 291 WP_000590569.1 PTS sugar transporter subunit IIB -
  R8623_RS05545 - 1100385..1100860 (-) 476 Protein_1098 PTS sugar transporter subunit IIA -
  R8623_RS05550 (PC0401_10840) - 1101040..1101192 (+) 153 WP_000693359.1 hypothetical protein -
  R8623_RS05555 (PC0401_10850) lepA 1101273..1103096 (-) 1824 WP_001047220.1 translation elongation factor 4 -
  R8623_RS05560 (PC0401_10860) - 1103175..1103903 (-) 729 WP_000133341.1 metallophosphoesterase family protein -
  R8623_RS05565 (PC0401_10870) recN 1103905..1105572 (-) 1668 WP_016398284.1 DNA repair protein RecN Machinery gene
  R8623_RS05570 (PC0401_10880) - 1105579..1106010 (-) 432 WP_001034415.1 arginine repressor -
  R8623_RS05575 (PC0401_10890) - 1106003..1106818 (-) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  R8623_RS05580 (PC0401_10900) - 1106811..1107686 (-) 876 WP_000743808.1 polyprenyl synthetase family protein -
  R8623_RS05585 (PC0401_10910) - 1107683..1107895 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  R8623_RS05590 (PC0401_10920) xseA 1107873..1109213 (-) 1341 WP_016398286.1 exodeoxyribonuclease VII large subunit -
  R8623_RS05595 (PC0401_10930) udk 1109341..1109979 (-) 639 WP_001181378.1 uridine kinase -
  R8623_RS05600 (PC0401_10940) - 1110087..1110389 (-) 303 WP_000985093.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62895.34 Da        Isoelectric Point: 4.6798

>NTDB_id=83047 R8623_RS05565 WP_016398284.1 1103905..1105572(-) (recN) [Streptococcus pneumoniae strain PZ900700406]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRTIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLDLNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDSNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=83047 R8623_RS05565 WP_016398284.1 1103905..1105572(-) (recN) [Streptococcus pneumoniae strain PZ900700406]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAACTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGATCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATAGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment