Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OH685_RS01610 Genome accession   NZ_CP125227
Coordinates   307166..307753 (-) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain SO1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 302166..312753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH685_RS01590 (OH685_01595) - 302600..302923 (+) 324 WP_002117414.1 AzlD domain-containing protein -
  OH685_RS01595 (OH685_01600) - 303265..306489 (-) 3225 WP_282463685.1 hypothetical protein -
  OH685_RS01600 (OH685_01605) - 306504..306848 (-) 345 WP_016684882.1 hypothetical protein -
  OH685_RS01605 (OH685_01610) - 306934..307125 (+) 192 Protein_298 AzlD domain-containing protein -
  OH685_RS01610 (OH685_01615) ssb 307166..307753 (-) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  OH685_RS01615 (OH685_01620) yajR 307805..309169 (-) 1365 WP_005078603.1 MFS transporter -
  OH685_RS01620 (OH685_01625) - 309316..310398 (-) 1083 WP_005066886.1 DUF475 domain-containing protein -
  OH685_RS01625 (OH685_01630) tenA 310659..311333 (+) 675 WP_017387547.1 thiaminase II -
  OH685_RS01630 (OH685_01635) - 311400..311771 (+) 372 WP_005078608.1 MerR family transcriptional regulator -
  OH685_RS01635 (OH685_01640) - 311875..312681 (+) 807 WP_282463686.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=830431 OH685_RS01610 WP_005066890.1 307166..307753(-) (ssb) [Acinetobacter pittii strain SO1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=830431 OH685_RS01610 WP_005066890.1 307166..307753(-) (ssb) [Acinetobacter pittii strain SO1]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCGCCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385