Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SPM78_RS31300 Genome accession   NZ_CP139424
Coordinates   6636207..6636704 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 136790     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6631207..6641704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPM78_RS31285 (SPM78_31285) bfr 6631215..6631679 (+) 465 WP_003093668.1 bacterioferritin -
  SPM78_RS31290 (SPM78_31290) uvrA 6631751..6634588 (-) 2838 WP_003110572.1 excinuclease ABC subunit UvrA Machinery gene
  SPM78_RS31295 (SPM78_31295) - 6634802..6636190 (+) 1389 WP_023095163.1 MFS transporter -
  SPM78_RS31300 (SPM78_31300) ssb 6636207..6636704 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  SPM78_RS31305 (SPM78_31305) pchA 6636791..6638221 (-) 1431 WP_023095164.1 isochorismate synthase PchA -
  SPM78_RS31310 (SPM78_31310) pchB 6638218..6638523 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  SPM78_RS31315 (SPM78_31315) pchC 6638523..6639278 (-) 756 WP_003093651.1 pyochelin biosynthesis editing thioesterase PchC -
  SPM78_RS31320 (SPM78_31320) pchD 6639275..6640918 (-) 1644 WP_009316327.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=830393 SPM78_RS31300 WP_003114685.1 6636207..6636704(+) (ssb) [Pseudomonas aeruginosa strain 136790]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=830393 SPM78_RS31300 WP_003114685.1 6636207..6636704(+) (ssb) [Pseudomonas aeruginosa strain 136790]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATCCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515