Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SIY75_RS20415 Genome accession   NZ_CP139339
Coordinates   4205760..4206296 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain YZ22MPE6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4200760..4211296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIY75_RS20395 soxR 4202488..4202952 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  SIY75_RS20400 soxS 4203038..4203361 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  SIY75_RS20405 pdeC 4203364..4204950 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  SIY75_RS20410 yjcB 4205380..4205661 (+) 282 WP_001295689.1 YjcB family protein -
  SIY75_RS20415 ssb 4205760..4206296 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SIY75_RS20420 uvrA 4206550..4209372 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  SIY75_RS20425 yjbR 4209407..4209763 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  SIY75_RS20430 yjbQ 4209767..4210183 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SIY75_RS20435 aphA 4210294..4211007 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=830197 SIY75_RS20415 WP_000168305.1 4205760..4206296(-) (ssb) [Escherichia coli strain YZ22MPE6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=830197 SIY75_RS20415 WP_000168305.1 4205760..4206296(-) (ssb) [Escherichia coli strain YZ22MPE6]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489